Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq36 286 4e-72 >seq36 Length=80385 Score = 286 bits (316), Expect = 4e-72 Identities = 605/892 (68%), Gaps = 17/892 (2%) Strand=Plus/Plus Query 23864 TTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATT 23923 ||| || || ||||| ||||| || || || | |||||||| ||||| ||||||| Sbjct 37859 TTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATGGATT 37918 Query 23924 GGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTC 23983 | ||| || | | ||| ||| ||| || | | || ||||||||| ||||| || Sbjct 37919 TTTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCACAAATTC 37978 Query 23984 CATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 24043 || || | ||| | | |||||||||||| || | ||||||| | || | || Sbjct 37979 TATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGTCTGT 38038 Query 24044 AAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACT 24103 | ||| |||| ||| || || || || | | || | | ||| || || | |||| Sbjct 38039 CAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCT-TTAATGCTTTTGCACT 38097 Query 24104 CGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTC 24163 | || || ||| |||| | |||||| ||||| || ||||||||||| Sbjct 38098 TATTTC-TAATGTACTTGTGTAAA----AGACATGCAAAATCTGTATGAAGACCCTCGTC 38152 Query 24164 TCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 24223 || ||| | ||| || ||||| || ||||| ||||| | || | |||||| ||||| Sbjct 38153 CCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTTGAGCCA 38212 Query 24224 AAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 24283 ||| || | ||||| || ||| || |||||||||||||| |||||| || | Sbjct 38213 AAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGCCACGCA 38272 Query 24284 TCTTTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 24340 ||| || || | |||| || ||||||||||| ||||| || || || || Sbjct 38273 TCTCGTGTCAAAAGAAGTATCGCTTACA---ATCCACTTTTGTGCCCATTCTGCTTTTTT 38329 Query 24341 TTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTT 24400 || | || || | ||||| |||||||| ||||| |||| || ||| |||| Sbjct 38330 CTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTATAATCTGG 38389 Query 24401 AACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTG 24460 || |||| || ||||| ||||||||| ||||| |||||||| || || ||||| Sbjct 38390 TACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTATTGCAATTTG 38449 Query 24461 AAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAA 24520 ||| ||||| ||||| | || || ||| || || | |||||| ||||| ||| Sbjct 38450 AAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAATCTTTCTGATAA 38509 Query 24521 ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 24580 ||||||||| || ||||| || || |||||||| || | || |||||||||| | Sbjct 38510 ATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTTTTTATAAAAAA 38569 Query 24581 TTTTTCGTCTGGTGTT-AGTTTATTCCAAT-CATTGATATCTTTAGATATATCCACTTCT 24638 || |||| | |||| |||| ||| ||| |||| || || || || || |||||| Sbjct 38570 TTGCTCGT-TTTTGTTGAGTTGATTAAAATGCATT-ATGTCAAAAGTTAAGTCTACTTCT 38627 Query 24639 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 24698 || || |||||||| | | || |||||||| | || ||| || || |||||||| Sbjct 38628 TCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTTCTTGATATTGT 38687 Query 24699 ATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCATAA 24750 |||||||| | |||| | || || |||| | |||| | ||||| ||||| Sbjct 38688 ATTGGAAATAAAACATACCTCTTGTGATTCTGGTCAAGAAGTGGTT-CATAA 38738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721139865760