Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq36 298 5e-76 >seq36 Length=80385 Score = 298 bits (330), Expect = 5e-76 Identities = 592/864 (69%), Gaps = 27/864 (3%) Strand=Plus/Plus Query 15965 TTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTT 16024 || |||||||||||||||||||| || || | ||||||||||||||||| |||||| Sbjct 37860 TTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATGGATTT 37919 Query 16025 TTTGAACAATAGTATTTATCGCA-TCCCAATTCCAACAATAATCTATCCGCCACAAATTC 16083 || | | || || || | || ||| ||| | | || | |||||| ||||||||||| Sbjct 37920 TTCGTATTGTA-TACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCACAAATTC 37978 Query 16084 TATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGT 16143 ||| |||||| ||| | | ||| |||||||| || || |||| || | ||| ||||| Sbjct 37979 TATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGTCTGT 38038 Query 16144 TAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAA 16203 ||||| | ||||||||| | || ||||| || | ||| || ||| | || || | Sbjct 38039 CAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCT-TTA--ATGCTTTTGCA 38095 Query 16204 CGGAGGGTTTAA--TAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCG 16261 | | | ||| || ||| |||| | ||| |||||||| ||| | || ||| Sbjct 38096 CTTA-TTTCTAATGTACTTGTGTAAA----AGACATGCAAAATCTGTATGAAGACCCTCG 38150 Query 16262 TCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATC 16321 ||||| || | || ||||||||||| || |||||||| | ||||| ||||| | | Sbjct 38151 TCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTTGAGC 38210 Query 16322 CAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACC 16381 ||||| || || ||||| |||||| || || || ||||| || |||||||| || Sbjct 38211 CAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGCCACG 38270 Query 16382 AATCGCTCACCGTACGTTCTAtttttactttctatccattttttagcccaatttgctttt 16441 ||| | | | | | | | ||| | ||||| |||| ||||| | ||||||| Sbjct 38271 CATCTCGTGTCAAAAG---AAGTATCGCTTACAATCCACTTTTGTGCCCATTCTGCTTTT 38327 Query 16442 tgtttAA-CACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATC 16500 | |||| | | | ||||| |||||||||||||| | |||||||| ||||| ||| Sbjct 38328 TTCTTAATTGCTGGT-ATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTATAATC 38386 Query 16501 TAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTAT 16560 | | | || ||||| | | ||||||||||||||| || || || ||||| || Sbjct 38387 TGGTACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTATTGCAAT 38446 Query 16561 CTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGC 16620 ||||| || ||||| || | ||||| | || || ||| |||| ||||||| Sbjct 38447 TTGAAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAATCTTTCTGA 38506 Query 16621 TAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAA 16680 ||| ||||| || || |||||||| || |||||||| ||||| | ||| ||||| Sbjct 38507 TAAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTTTTTATAAA 38566 Query 16681 AtttttttCGTTATCTGAAAGTT--TTAA---CCAGTCAGAAAAATCTTTTGATAAATCG 16735 | || ||||| | |||| |||| || | | ||| | ||| || Sbjct 38567 AAATTGCTCGTTTTTGTTGAGTTGATTAAAATGCATTATGTCAAA-----AGTTAAGTCT 38621 Query 16736 ACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCG 16795 || ||||||||||||||||||| || | |||||||| | | |||||| |||| Sbjct 38622 ACTTCTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTTCTTGA 38681 Query 16796 TAAACAATAGGAAACACAACATAC 16819 || || ||||| | ||||||| Sbjct 38682 TATTGTATTGGAAATAAAACATAC 38705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511641553200