Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq36 154 1e-32 >seq36 Length=80385 Score = 154 bits (170), Expect = 1e-32 Identities = 591/918 (64%), Gaps = 29/918 (3%) Strand=Plus/Minus Query 57508 ATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAG 57567 ||||||||||| | | |||||| | || | ||| | ||||| || |||||| || Sbjct 38736 ATGAACCACTTCTTGACCAGAATCACAAGAGGTATGTTTTATTTCCAATACAATATCAAG 38677 Query 57568 ACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACC 57627 | || ||| | | || ||||| ||| | | |||||||| || |||||||||||| Sbjct 38676 AAATATGGGATTTTTATAAAAAACACGAATCTACTTTTTGGACTGTAGAAGAAGTAGACT 38617 Query 57628 TGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAAC 57687 | || || | | ||| || ||||| || ||| | |||||| ||| Sbjct 38616 TAACTTTTGACATAATGCATTTTAATCAACTCAACAAAAACGAGCAATTTTTTATAAAAA 38557 Query 57688 ACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGAT 57747 || | || ||||| || ||||| ||||| ||||| || || ||||| ||||||| Sbjct 38556 GAGTTCTTGCATTTTTTGCTGCATCAGATGGAATTGTAAATGAAAATTTATCAGAAAGAT 38497 Query 57748 TTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTG 57807 ||||| | || || | ||| || | || |||||||| |||||| | || || | Sbjct 38496 TTTCAAATGATGTTACCATTTTGGAAGCAAAGTGTTTTTACGGCTTTCAAATTGCAATAG 38437 Query 57808 AAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACG 57867 ||||| | ||||||||||||||||| | | || || || | || || | | | Sbjct 38436 AAAACATACATTCAGAAATGTATTCAAAATTGATAGAAACATTGGTACCAGATTATAAAG 38377 Query 57868 AGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGT 57927 || || | || || || || || |||| || || || || || || ||||| | Sbjct 38376 AGCAAAATTATCTTTTTAATGCAATAGAAAACATACCAGCAATTAAGAAAAAAGCAGAAT 38317 Query 57928 GGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGC-CGAGAGGCTAATCGCGTTC 57986 || || || ||||| ||||| || | || | ||||| || | || || Sbjct 38316 GGGCACAAAAGTGGATTGTAAGCGATACTTC--TTTTGACACGAGATGC--GTGGCATTT 38261 Query 57987 GCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAA 58046 || || ||||| || || || || ||||| ||||| |||||| | || || Sbjct 38260 GCGTGTGTAGAAGGAATTTTTTTCAGTGGTTCTTTTGCTGCAATTTTTTGGCTCAAAAAG 38201 Query 58047 CGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTC 58106 | || ||||||| || || || ||| || || | || || | ||||||||||| Sbjct 38200 AGAGGATTGATGCCAGGACTAACATTTTCAAATGAACTTATTTCCAGGGACGAGGGTCTT 38141 Query 58107 CATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGC 58166 ||||| |||||||| || || | || ||||| ||||| | | | || Sbjct 38140 CATACAGATTTTGCATGTCTTTTACACAAGTACATTAGAAATAA------GTGCAAAAGC 38087 Query 58167 ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTA 58226 || | ||| | | || || || | || ||||| |||||| | || || || || Sbjct 38086 ATTAAAGCCATAGTTATGGAAGCAGTGGAAATAGAAAAAGAGTTTTTGACAGACGCATTA 38027 Query 58227 CCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCC 58286 || || || | || ||||| | | | ||| | ||||||| || ||||| || Sbjct 38026 CCAGTTAGTTTGATTGGAATGAATTGTAACCTTATGGGACAGTACATAGAATTTGTGGCA 37967 Query 58287 GACAGACTTTTGCTCGAACTG-ATT-GGAGAGCGTCA---TTACAACACGAAAAATCCGT 58341 || ||||| || | || ||| ||||||| | ||||| ||||||||||| | Sbjct 37966 GATAGACTGTT-----ATATGCATTAGGAGAGCAAAAAGTATACAATACGAAAAATCCAT 37912 Query 58342 TTGATTTTATG---AATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaG 58398 ||||||||||| || ||| | | ||||| || ||||| || || || ||||||| Sbjct 37911 TTGATTTTATGGAAAACTTGAGTT---TGGAGGGAAAAACAAATTTCTTTGATAAAAAAG 37855 Query 58399 TTAGCGAA-TATCAAAAA 58415 ||| || ||||| ||| Sbjct 37854 -AAGCAAATTATCAGAAA 37838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766054531040