Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq36 291 1e-73 >seq36 Length=80385 Score = 291 bits (322), Expect = 1e-73 Identities = 610/895 (68%), Gaps = 23/895 (3%) Strand=Plus/Plus Query 33311 TTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 ||| || || ||||| |||||||| ||||| | |||||||| |||||||| ||||| Sbjct 37859 TTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATGGATT 37918 Query 33371 GGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTC 33430 | |||||| | ||||| ||| ||| || | | || ||||||||| || ||||| Sbjct 37919 TTTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCACAAATTC 37978 Query 33431 TATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGT 33490 ||| || | ||| | | |||||||||||| || | ||||||| | || | || Sbjct 37979 TATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGTCTGT 38038 Query 33491 AAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACT 33550 | ||| |||| ||| || || || | | | || | ||| | ||| | |||| Sbjct 38039 CAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCTTTAATGCTTT-TGCACT 38097 Query 33551 CGGTGG--ATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCG 33608 | ||||| | ||| |||| | |||||| ||||| || ||||||||| Sbjct 38098 TATTTCTAATGTACT---TGTGTAAA----AGACATGCAAAATCTGTATGAAGACCCTCG 38150 Query 33609 TCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGC 33668 || || ||| | ||| || ||||| || ||||| ||||| | || | |||||| ||| Sbjct 38151 TCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTTGAGC 38210 Query 33669 CAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATA 33728 ||||| || | ||| || || || || || ||||||||||| ||||| || | Sbjct 38211 CAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGCCACG 38270 Query 33729 AGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTC 33785 |||| || || | |||| || ||||||||||| ||||| || || || Sbjct 38271 CATCTCGTGTCAAAAGAAGTATCGCTTACA---ATCCACTTTTGTGCCCATTCTGCTTTT 38327 Query 33786 TTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 33845 || || | || || ||||||| |||||||| ||||| |||| || ||| |||| Sbjct 38328 TTCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTATAATCT 38387 Query 33846 TTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33905 || | || || ||||| ||||||||| ||||| |||||||| || || || Sbjct 38388 GGTACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTATTGCAATT 38447 Query 33906 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCT 33965 ||||| ||||| ||||| | || || ||| || || | |||||| ||||| | Sbjct 38448 TGAAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAATCTTTCTGAT 38507 Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 ||||||||||| || |||||||| || |||||||| || | || |||||||||| Sbjct 38508 AAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTTTTTATAAAA 38567 Query 34026 TATTTTTCGTCTGGTGTT-AGTTTATTCCAAT-CATTGATATCTTTAGATATATCCACTT 34083 ||| |||| | |||| |||| ||| ||| |||| || || || || || |||| Sbjct 38568 AATTGCTCGT-TTTTGTTGAGTTGATTAAAATGCATT-ATGTCAAAAGTTAAGTCTACTT 38625 Query 34084 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 34143 |||| || |||||||| | | || |||||||| | || ||| || || ||||||| Sbjct 38626 CTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTTCTTGATATT 38685 Query 34144 GGATTGGGAAAATAACAAATCTATTTGGATT-TGGTGCAAGGATAGGTTCCATAA 34197 | ||||| || | |||| | || || |||| |||| |||| | |||| ||||| Sbjct 38686 GTATTGGAAATAAAACATACCTCTTGTGATTCTGGT-CAAGAAGTGGTT-CATAA 38738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817111891360