Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq18 392 8e-105 >seq18 Length=4217 Score = 392 bits (434), Expect = 8e-105 Identities = 680/975 (70%), Gaps = 20/975 (2%) Strand=Plus/Plus Query 19107 TTCATT-TTTGTTTCTCATTTTTGATGATGTATTTTGGGCGATGTTTGCTTTCAATATAG 19165 |||||| ||| |||| |||| | || ||| |||| || | || |||| |||||| Sbjct 1854 TTCATTATTTAAATCTCTTTTTAAA--ATATATCTTGGTCGTTTCTTAGTTTCCATATAG 1911 Query 19166 ATTCTGCCTATATATTCACCGAGAACACCAATCCCGATCAGTTGCACTCCACCCAAGAAA 19225 || || || |||||||| || | ||| || || || || ||||| || ||||| || || Sbjct 1912 ATCCTACCAATATATTCCCCTAAAACGCCTATTCCTATAAGTTGTACACCACCTAAAAAT 1971 Query 19226 AGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACCAAAGACAAGGGTGTCT 19285 || ||||| || | | || ||||| || ||| || || | | || || ||| Sbjct 1972 AGGATTGAAACTAATAATGACGGATATCCTTTTACATCATTTCCCCAAATAATAGTTTCT 2031 Query 19286 ATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAACAAACCTATATAAGTC 19345 | ||||| ||| | |||||||||||| || | | |||||| || | || | ||| ||| Sbjct 2032 AAAATCAACCAAGAACCATATAAAAAAGATAAGGTTGCAATTAAAAGTCCAACATATGTC 2091 Query 19346 CATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCCAGATTCCATAAT 19405 || | | | ||| | |||||||||||||| | ||||| | ||| |||||||| | Sbjct 2092 CAAATTCTCAAAGGTATCGTTGAAAAACTTGTAACCCCTTCTAATGCAAGATTCCAAAGC 2151 Query 19406 TTCCAGCCATTAAATTTTGAGATGCCAGCAACGCGCTCTGCGCGTACATATTCAACGACA 19465 ||||| |||||||| || | |||||| | | || ||||||||||| ||| Sbjct 2152 TTCCACCCATTAAACTTGGTTTGACCAGCACTTCTTGTAGGACGAACATATTCAACAACA 2211 Query 19466 TCTGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAAC 19525 || ||| ||||| ||||| |||| |||||||| ||||| || ||||| | Sbjct 2212 TCGATCTTTCCACCAACCCAAGAAAGTACTCCTTTCATAAAAAGGTTTATTTCAGGTAGT 2271 Query 19526 AGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAATCTCCGACATTTTCCTCG 19585 ||||| || || |||| ||| | |||||| | ||||||||| || |||||||| || Sbjct 2272 CTCTTAATATTTTCTACAATCTCTCTAGACATTAATCGAAAATCACCAACATTTTCTTCA 2331 Query 19586 ATCTTTGGGGTGCTTATTTTGTTGTGTAACTTATAGAACCACTCAGCTG----TCTTACG 19641 || || || | ||| || ||||| ||||| ||| || | ||| | |||| Sbjct 2332 ATTTTAGGTGAGCTAATCTTGTTATGTAATCGATAAAATGCCAAAGCCGTTGATCTT--- 2388 Query 19642 TTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCATGTCAGCACCTGC 19701 ||| | | | | |||||| | ||| |||||||| | ||||| ||||| || || Sbjct 2389 TTTAAATAG-CTATCAGTACTTCTGTCACTTCGTTTAGCTAAAACCATATCAGCTCCAGC 2447 Query 19702 CTGCCACTTTTCAATAAGATGAGGGATGACCTCAATAGGATCTTGCAGGTCGACATCAAT 19761 |||||||||| |||| || | || || |||||||| || || || ||||| |||||||| Sbjct 2448 CTGCCACTTTGCAATCAGTAGCGGAATAACCTCAATGGGGTCCTGAAGGTCAACATCAAT 2507 Query 19762 AGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGGCTGGTTCTTTACC 19821 ||||| |||||||| || ||||||| |||| |||||||||||| || || |||||||| Sbjct 2508 TGGAATAACAGCATCACCAGTTGCATGCTCTATCCCTGCAAATAAAGCAGGCTCTTTACC 2567 Query 19822 AAAGTTGCGTGTAAA--TGACAGC-GGAACAACTAGTGGGTCTGAAACAGCCAGCGCGTT 19878 |||||| | ||||| | | || ||||| | | |||| || | || |||| Sbjct 2568 AAAGTTTCTAGTAAAACTTAATGCTCTAACAA--ACT-TATCTGTAAGTGATAGTTCGTT 2624 Query 19879 AATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAATTTCTACTTCATA 19938 ||||||| | ||||| |||||||| || ||||| ||||| | || || || ||||| Sbjct 2625 AATAATTAATTCTGTTTTGTCTTTACTACCATCATTAATGAAAATGATCTCCACATCATA 2684 Query 19939 TGGCTTCAACTCTTGGA-ATTCACGTACCGTTTTATAGAAAACAGGTATCGCTTCTTCTT 19997 | ||| || | | | | | || | | ||| |||| ||| || |||||||||| Sbjct 2685 TTTCTT-AAGGGGAGCATAATTTCTAACAGCGTCATAAAAAATAGGGATAGCTTCTTCTT 2743 Query 19998 CATTGAAGACAGGAACGACAAGAGATATTTTCATTTCGCATCCCTAAAGACAATGAACTT 20057 |||| || |||||||| | ||||||||||||| | | | |||||| || | | || Sbjct 2744 CATTAAAAACAGGAACAATTAGAGATATTTTCA-TACTACTTCCTAAACACTAAATATTT 2802 Query 20058 TGAATAGACGAAACC 20072 |||||| | ||||| Sbjct 2803 TGAATATAAAAAACC 2817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118515112743184