Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq34 84.2 2e-11 seq32 84.2 2e-11 >seq34 Length=123199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | || || || || || |||||||| | ||| || ||| Sbjct 109601 CAAAACCAAGTGCAGTGTGCTTTCCTTCTGGATATTATAATCTGATAATGTTCTTCCGTC 109660 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || ||| | || || | ||||| || ||||| || ||||||||||| Sbjct 109661 TTCCAGCTGTTTTCCTGCAAAAATAAGTCTCTGCTGCTCAGGAGGAATTCCTTCTTTGTC 109720 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | |||| ||| | || || || | || | | || ||||| | || | | Sbjct 109721 -TTGAATCTTTGCTTTGACATTTTCAATGCTATCCGAGCTTTCTACCTCCAAAGTAATTG 109779 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || |||| || ||||| ||||| |||||| Sbjct 109780 TCTTACCAGTCAGTGTCTTTACAAATATCTGCATA 109814 >seq32 Length=103007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | || || || || || |||||||| | ||| || ||| Sbjct 13600 CAAAACCAAGTGCAGTGTGCTTTCCTTCTGGATATTATAATCTGATAATGTTCTTCCGTC 13541 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || ||| | || || | ||||| || ||||| || ||||||||||| Sbjct 13540 TTCCAGCTGTTTTCCTGCAAAAATAAGTCTCTGCTGCTCAGGAGGAATTCCTTCTTTGTC 13481 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | |||| ||| | || || || | || | | || ||||| | || | | Sbjct 13480 -TTGAATCTTTGCTTTGACATTTTCAATGCTATCCGAGCTTTCTACCTCCAAAGTAATTG 13422 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || |||| || ||||| ||||| |||||| Sbjct 13421 TCTTACCAGTCAGTGTCTTTACAAATATCTGCATA 13387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||| | || || || || || |||||||| | ||| || ||| Sbjct 23140 CAAAACCAAGTGCAGTGTGCTTTCCTTCTGGATATTATAATCTGATAATGTTCTTCCGTC 23199 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| |||||||| || ||| | || || | ||||| || ||||| || ||||||||||| Sbjct 23200 TTCCAGCTGTTTTCCTGCAAAAATAAGTCTCTGCTGCTCAGGAGGAATTCCTTCTTTGTC 23259 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| | |||| ||| | || || || | || | | || ||||| | || | | Sbjct 23260 -TTGAATCTTTGCTTTGACATTTTCAATGCTATCCGAGCTTTCTACCTCCAAAGTAATTG 23318 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || |||| || ||||| ||||| |||||| Sbjct 23319 TCTTACCAGTCAGTGTCTTTACAAATATCTGCATA 23353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063615550400