Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq36 300 2e-76 >seq36 Length=80385 Score = 300 bits (332), Expect = 2e-76 Identities = 612/895 (68%), Gaps = 23/895 (3%) Strand=Plus/Plus Query 49689 TTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 49748 ||| || || ||||| |||||||| ||||| | |||||||| |||||||| ||||| Sbjct 37859 TTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATGGATT 37918 Query 49749 GGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTC 49808 | ||| || | ||||| ||| ||| || | | || |||||| || |||||||| Sbjct 37919 TTTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCACAAATTC 37978 Query 49809 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGT 49868 ||| || | ||| | | |||||||||||| || | ||||||| | || | || Sbjct 37979 TATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGTCTGT 38038 Query 49869 AAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACT 49928 | ||| |||| ||| || || || || | | || | | ||| | ||| | |||| Sbjct 38039 CAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCTTTAATGCTTT-TGCACT 38097 Query 49929 CGGTGG--ATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCG 49986 | ||| | | ||| |||| | |||||| ||||| || ||||||||| Sbjct 38098 TATTTCTAATGTACT---TGTGTAAA----AGACATGCAAAATCTGTATGAAGACCCTCG 38150 Query 49987 TCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGC 50046 || || ||| ||||| || ||||| || ||||| ||||| | || | |||||| ||| Sbjct 38151 TCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTTGAGC 38210 Query 50047 CAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACA 50106 ||||| || | ||||| || ||| || || ||||||||||| ||||| || || Sbjct 38211 CAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGCCACG 38270 Query 50107 AGTCTC---TCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTC 50163 |||| || | || | |||| || ||||||||||| ||||| || || || Sbjct 38271 CATCTCGTGTCAAAAGAAGTATCGCTTACA---ATCCACTTTTGTGCCCATTCTGCTTTT 38327 Query 50164 TTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 50223 || || | || || ||||||| |||||||| ||||| |||| || ||| |||| Sbjct 38328 TTCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTATAATCT 38387 Query 50224 TTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 50283 || | || || ||||| ||||||||| ||||| |||||||| || || || Sbjct 38388 GGTACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTATTGCAATT 38447 Query 50284 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCT 50343 ||||| ||||| ||||| | || || ||| || || | |||||| ||| | | Sbjct 38448 TGAAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAATCTTTCTGAT 38507 Query 50344 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 50403 ||||||||||| || ||||| || || |||||||| || | || |||||||||| Sbjct 38508 AAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTTTTTATAAAA 38567 Query 50404 TGTTTTTCGTTGGGTGTT-AGTTTATTCCAAT-CATTGATATCTTTAGATATATCTACTT 50461 || ||||| |||| |||| ||| ||| |||| || || || || ||||||| Sbjct 38568 AATTGCTCGTT-TTTGTTGAGTTGATTAAAATGCATT-ATGTCAAAAGTTAAGTCTACTT 38625 Query 50462 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 50521 |||| || |||||||| | | || |||||||| | || ||| || || ||||||| Sbjct 38626 CTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTTCTTGATATT 38685 Query 50522 GGATTGGGAAAATAACAAATCTATTTGGATT-TGGTGCAAGGATCGGTTCCATAA 50575 | ||||| || | |||| | || || |||| |||| |||| | |||| ||||| Sbjct 38686 GTATTGGAAATAAAACATACCTCTTGTGATTCTGGT-CAAGAAGTGGTT-CATAA 38738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268243341680