Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq36 259 5e-64 >seq36 Length=80385 Score = 259 bits (286), Expect = 5e-64 Identities = 577/858 (67%), Gaps = 25/858 (3%) Strand=Plus/Plus Query 13385 CTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATG 13444 || |||| ||||| || || ||||| || |||| | |||||||||||||| |||| Sbjct 37855 CTTTTTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATG 37914 Query 13445 GATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAA 13504 ||||| | | | | ||||| | |||| | | |||| | |||||| || | || Sbjct 37915 GATTTTTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCACAA 37974 Query 13505 ACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATAT 13564 | || || || || ||| | | ||||||||| || || | | || || | | | Sbjct 37975 ATTCTATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGT 38034 Query 13565 TAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT--CTTAATAATGTC 13622 || ||||| ||||||||||| ||| || || |||| || ||| ||||| Sbjct 38035 CTGTCAAAAACTCTTTTTCTATTTCCACTGCTTCC---ATAACTATGGCTT--TAATGCT 38089 Query 13623 ATTAGAAGGAGGA-TATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGC 13681 || | | || | || ||| ||||| ||| |||||||| |||||| | Sbjct 38090 TTTGCACTTATTTCTAATGTACTTGTGTAAAAG----ACATGCAAAATCTGTATGAAGAC 38145 Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||| || || ||||||||| ||||||||||||| ||||||||||||||||| |||| Sbjct 38146 CCTCGTCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTT 38205 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | |||||| |||||||| || || || || || ||||| || || ||||| | Sbjct 38206 TGAGCCAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATG 38265 Query 13802 CTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAG 13861 | | || |||| || | | | | || ||||| ||| |||||||| | Sbjct 38266 CCACGCATCTCGTGTCAAAAGAAG---TATCGCTTACAATCCACTTTTGTGCCCATTCTG 38322 Query 13862 AtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAG 13921 |||||| ||||| || |||| |||||||| || | || | | ||||||| Sbjct 38323 CTTTTTTCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTAT 38382 Query 13922 TACTTGA----AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCT 13977 | || ||||| | ||||||| || |||||||| || |||||||||||| Sbjct 38383 AATCTGGTACCAATGTTTCTATCAATTTTGAA----TACATTTCTGAATGTATGTTTTCT 38438 Query 13978 ATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGT-AAAA 14036 || || || ||||| || |||||||| | ||||| | || ||| | | | |||| Sbjct 38439 ATTGCAATTTGAAAGCCGTAAAAACACTTTGCTTCCAAA-ATGGTAACATCATTTGAAAA 38497 Query 14037 TCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTT 14096 |||||||| || |||||||| ||||| ||||| || ||||||||||| | | | Sbjct 38498 TCTTTCTGATAAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCT 38557 Query 14097 TTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAG 14156 ||| ||||| ||||||| | |||||||||| || ||| || || || | Sbjct 38558 TTTTATAAAAAATTGCTCGTTTTTGTTGAGTTGATTAAAATGCATTATGTCAAAAGTTAA 38617 Query 14157 ATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTC 14216 |||||||| || || ||||||||| ||| | ||||||||| | |||||||||| Sbjct 38618 GTCTACTTCTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTTC 38677 Query 14217 TTTATATAATATAGGAAA 14234 || |||| ||| ||||| Sbjct 38678 TTGATATTGTATTGGAAA 38695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588429093680