Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq36 280 2e-70 >seq36 Length=80385 Score = 280 bits (310), Expect = 2e-70 Identities = 606/893 (68%), Gaps = 19/893 (2%) Strand=Plus/Plus Query 41794 TTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 ||| || || ||||| || ||||| ||||| | |||||||| |||||||| ||||| Sbjct 37859 TTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATGGATT 37918 Query 41854 GGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTC 41913 | ||| || | ||||| ||| ||| || | | || ||||||||| | ||||| Sbjct 37919 TTTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCACAAATTC 37978 Query 41914 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 41973 ||| || | ||| | | |||||||||||| || | ||||||| | || | || Sbjct 37979 TATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGTCTGT 38038 Query 41974 AAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACT 42033 | ||| |||| ||| || || || || | | || | | ||| || || | |||| Sbjct 38039 CAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCT-TTAATGCTTTTGCACT 38097 Query 42034 CGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATC 42093 | || || ||| |||| | |||||| ||||| || |||||||| || Sbjct 38098 TATTTC-TAATGTACTTGTGTAAA----AGACATGCAAAATCTGTATGAAGACCCTCGTC 38152 Query 42094 TCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCA 42153 || ||| | ||| || ||||| || ||||| ||||| | || | |||||| ||||| Sbjct 38153 CCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTTGAGCCA 38212 Query 42154 AAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAG 42213 ||| || | ||||| || ||| || || ||||||||||| |||||| || | Sbjct 38213 AAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGCCACGCA 38272 Query 42214 TCTCTCTCCATAACCGGCA---CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 |||| || || | | || || ||||||||||| ||||| || || || || Sbjct 38273 TCTCGTGTCAAAAGAAGTATCGCTTACA---ATCCACTTTTGTGCCCATTCTGCTTTTTT 38329 Query 42271 TTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTT 42330 || | || || ||||||| |||||||| ||||| |||| || ||| |||| Sbjct 38330 CTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTATAATCTGG 38389 Query 42331 AACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTG 42390 || |||| || ||||| ||||||||||||||| |||||||| || || || || Sbjct 38390 TACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTATTGCAATTTG 38449 Query 42391 AAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAA 42450 ||| ||||| ||||| | || || || || || | |||||| ||| | ||| Sbjct 38450 AAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAATCTTTCTGATAA 38509 Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||| || || ||||| || || |||||||| || | || |||||||||| | Sbjct 38510 ATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTTTTTATAAAAAA 38569 Query 42511 TTTTTCGTCCGGTGTT-AATTTATTCCAAT-CATTGATATCTTTAGATATATCTACTTCT 42568 || |||| |||| | || ||| ||| |||| || || || || ||||||||| Sbjct 38570 TTGCTCGT-TTTTGTTGAGTTGATTAAAATGCATT-ATGTCAAAAGTTAAGTCTACTTCT 38627 Query 42569 TCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGA 42628 ||||| |||||||| | | ||| |||||||| | || ||| || || |||||||| Sbjct 38628 TCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTTCTTGATATTGT 38687 Query 42629 ATTGGGAAAATAACAAATCTATTTGGATT-TGGTGCAAGGATCGGTTCCATAA 42680 ||||| || | |||| | || || |||| |||| |||| | |||| ||||| Sbjct 38688 ATTGGAAATAAAACATACCTCTTGTGATTCTGGT-CAAGAAGTGGTT-CATAA 38738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138679867120