Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq34 96.9 4e-15 seq32 96.9 4e-15 seq36 86.0 6e-12 >seq34 Length=123199 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| || || | ||| ||| || || || || ||||| Sbjct 109587 CCTCCTCTCAGTCTCAAAACCAAGTGCAGTGTGCTTTCCTTCTGGATATTATAATCTGAT 109646 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| || ||||| || ||| | || || | ||||| || ||||| Sbjct 109647 AATGTTCTTCCGTCTTCCAGCTGTTTTCCTGCAAAAATAAGTCTCTGCTGCTCAGGAGGA 109706 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| ||| ||| | | ||| | | |||| | |||||| Sbjct 109707 ATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTTTCAATGCTATCCGAGCTTTCTACC 109766 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || |||| ||| ||||| ||||| |||||| Sbjct 109767 TCCAAAGTAATTGTCTTACCAGTCAGTGTCTTTACAAATATCTGCATA 109814 >seq32 Length=103007 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| || || | ||| ||| || || || || ||||| Sbjct 13614 CCTCCTCTCAGTCTCAAAACCAAGTGCAGTGTGCTTTCCTTCTGGATATTATAATCTGAT 13555 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| || ||||| || ||| | || || | ||||| || ||||| Sbjct 13554 AATGTTCTTCCGTCTTCCAGCTGTTTTCCTGCAAAAATAAGTCTCTGCTGCTCAGGAGGA 13495 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| ||| ||| | | ||| | | |||| | |||||| Sbjct 13494 ATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTTTCAATGCTATCCGAGCTTTCTACC 13435 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || |||| ||| ||||| ||||| |||||| Sbjct 13434 TCCAAAGTAATTGTCTTACCAGTCAGTGTCTTTACAAATATCTGCATA 13387 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||| || || | ||| ||| || || || || ||||| Sbjct 23126 CCTCCTCTCAGTCTCAAAACCAAGTGCAGTGTGCTTTCCTTCTGGATATTATAATCTGAT 23185 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| || ||||| || ||| | || || | ||||| || ||||| Sbjct 23186 AATGTTCTTCCGTCTTCCAGCTGTTTTCCTGCAAAAATAAGTCTCTGCTGCTCAGGAGGA 23245 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||| ||| ||| | | ||| | | |||| | |||||| Sbjct 23246 ATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTTTCAATGCTATCCGAGCTTTCTACC 23305 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || |||| ||| ||||| ||||| |||||| Sbjct 23306 TCCAAAGTAATTGTCTTACCAGTCAGTGTCTTTACAAATATCTGCATA 23353 >seq36 Length=80385 Score = 86.0 bits (94), Expect = 6e-12 Identities = 273/418 (65%), Gaps = 13/418 (3%) Strand=Plus/Minus Query 50422 GTGGCGTTTGCCATAGTTGAAGGTGTGtttttttCCGGTAGCTTTGCAGCCATATTTTAC 50481 ||||| ||||| || ||||| | ||||| ||| ||||| || || |||| Sbjct 38269 GTGGCATTTGCGTGTGTAGAAGGAATTTTTTTCAGTGGTTCTTTTGCTGCAATTTTTTGG 38210 Query 50482 ATTAAAACCTTAGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATTTCGCGCGAC 50541 | |||| ||| | ||||| || || || ||| || || | ||||| | ||| Sbjct 38209 CTCAAAAAGAGAGGATTGATGCCAGGACTAACATTTTCAAATGAACTTATTTCCAGGGAC 38150 Query 50542 GAAGGAATGCACACAGACTTTGCGTGT-TTGTACTACAATACGCGCGTAAATGAAAAATT 50600 || || | || ||||| ||||| ||| || ||| |||| ||| || | |||| Sbjct 38149 GAGGGTCTTCATACAGATTTTGCATGTCTTTTAC-ACAA-------GTACATTAGAAATA 38098 Query 50601 ATCATACGAAACAATTTTGGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTT 50660 | | | ||| ||| | ||| | | ||||| || || || |||||||||||||| Sbjct 38097 AG--TGCAAAAGCATTAAAGCCATAGTTATGGAAGCAGTGGAAATAGAAAAAGAGTTTTT 38040 Query 50661 CACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACAT 50720 || ||||| ||||| || ||| | || ||||| || | ||| | ||||||| Sbjct 38039 GACAGACGCATTACCAGTTAGTTTGATTGGAATGAATTGTAACCTTATGGGACAGTACAT 37980 Query 50721 TGAGTTTGTTGCAGACAGATTGTTGT-TGCAGCTGGGACAACCGAAATACTATAATGCAC 50779 || ||||| ||||| ||| |||| | |||| | ||| | | ||| || ||| | Sbjct 37979 AGAATTTGTGGCAGATAGACTGTTATATGCA-TTAGGAGAGCAAAAAGTATACAATACGA 37921 Query 50780 GTAACCCCTTTCCGTTTATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGA 50837 || || ||| |||||| | ||| | |||||||| |||||||| || || || Sbjct 37920 AAAATCCATTTGATTTTATGGAAAACTTGAGTTTGGAGGGAAAAACAAATTTCTTTGA 37863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014007063840