Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq18 316 5e-82 >seq18 Length=4217 Score = 316 bits (350), Expect = 5e-82 Identities = 634/936 (68%), Gaps = 9/936 (1%) Strand=Plus/Plus Query 1464 TTAAATTTCACT-TTTAAAACCCTTACGCTTTAATATGTATTTAGGCCGCTGTTTGGTTT 1522 ||| | |||| | |||||| | ||| ||||| || ||| | || || | || |||| Sbjct 1848 TTATACTTCATTATTTAAATCTCTT----TTTAAAATATATCTTGGTCGTTTCTTAGTTT 1903 Query 1523 CTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGAACGCCAC 1582 | || || || |||||||||||||| || | || ||||||||||| | ||| || |||| Sbjct 1904 CCATATAGATCCTACCAATATATTCCCCTAAAACGCCTATTCCTATAAGTTGTACACCAC 1963 Query 1583 CCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTTCC--AAATAT 1640 | | || || | ||||| | | ||||| || || |||| |||||| ||||| Sbjct 1964 CTAAAAATAGGATTGAAACTAATAATGACGGATATCCTTTTACATCATTTCCCCAAATAA 2023 Query 1641 TAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATAAACAATCC 1700 || ||| | || |||| ||| | ||| || | || || | |||||| || | ||| Sbjct 2024 TAGTTTCTAAA--ATCAACCAAGAACCATATAAAAAAGATAAGGTTGCAATTAAAAGTCC 2081 Query 1701 AATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCCTCCAGCGCCAG 1760 || || ||||| || | | || | ||||| ||| || | || || | || || Sbjct 2082 AACATATGTCCAAATTCTCAAAGGTATCGTTGAAAAACTTGTAACCCCTTCTAATGCAAG 2141 Query 1761 GTTCCATAATTTCCAGCCGTTGAATTTCGAATCACCGGCCACGCGTTCGGCACGGGCATA 1820 ||||| | ||||| || || || || | | ||| || | | | ||| |||| Sbjct 2142 ATTCCAAAGCTTCCACCCATTAAACTTGGTTTGACCAGCACTTCTTGTAGGACGAACATA 2201 Query 1821 TTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAACAAGTTGCG 1880 || ||||||||| | ||||| ||||||||| || || || |||||||| | ||| Sbjct 2202 TTCAACAACATCGATCTTTCCACCAACCCAAGAAAGTACTCCTTTCATAAAAAGGTTTAT 2261 Query 1881 TTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAGTCGCCAAC 1940 ||| || | | || || || || |||| | | | |||||| ||||| || ||||| Sbjct 2262 TTCAGGTAGTCTCTTAATATTTTCTACAATCTCTCTAGACATTAATCGAAAATCACCAAC 2321 Query 1941 ATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCACTCAGCTGT 2000 ||||||||| ||||| || ||| || || || || | |||||| | ||| || Sbjct 2322 ATTTTCTTCAATTTTAGGTGAGCTAATCTTGTTATGTAATCGATAAAATGCCAAAGCCGT 2381 Query 2001 CTTACGCTTCAACCTCCCATCAGTTGAGCGGTCTGAGCGCTTAGCCAGCACCATATCCGC 2060 | || || | |||||| | ||| || ||||| | |||||||| || Sbjct 2382 TGATCTTTTTAAATAGCTATCAGTACTTCTGTCACTTCGTTTAGCTAAAACCATATCAGC 2441 Query 2061 GCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTCTATCGGATCCTGTAAATCGAC 2120 |||||||||||||| |||| || | || ||||| || || || ||||| | || || Sbjct 2442 TCCAGCCTGCCACTTTGCAATCAGTAGCGGAATAACCTCAATGGGGTCCTGAAGGTCAAC 2501 Query 2121 ATCAATAGGAATGACCGCATCTCCGGTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTTC 2180 |||||| ||||| || ||||| || |||||||| || | || || || | |||||| || Sbjct 2502 ATCAATTGGAATAACAGCATCACCAGTTGCATGCTCTATCCCTGCAAATAAAGCAGGCTC 2561 Query 2181 TTTACCGAAGTTTCGCGTAAACGAAAGCGGAATAACGAGCGGATCAGATGCGGCTATTTT 2240 |||||| ||||||| ||||| | | |||| | | ||| | | || || Sbjct 2562 TTTACCAAAGTTTCTAGTAAAACTTAATGCTCTAACAAACTTATCTGTAAGTGATAGTTC 2621 Query 2241 GTTAATTATTGATTCAGTCGCATCTTTACTACCATCATTAATAAAAACGATCTCAATTTC 2300 |||||| ||| |||| || |||||||||||||||||||| |||| |||||| | || Sbjct 2622 GTTAATAATTAATTCTGTTTTGTCTTTACTACCATCATTAATGAAAATGATCTCCACATC 2681 Query 2301 ATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTATAGAAAATCGGTATCGTGTCTTC 2360 ||||| || || | | | | | || | | ||| ||||| || || | ||||| Sbjct 2682 ATATTTCTTAAGGGGAGCATAATTTCTAACAGCGTCATAAAAAATAGGGATAGCTTCTTC 2741 Query 2361 TTCGTTAAAAACTGGAACGACAAGAGAGATTTTCAT 2396 ||| |||||||| ||||| | ||||| |||||||| Sbjct 2742 TTCATTAAAAACAGGAACAATTAGAGATATTTTCAT 2777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132329502572332