Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq36 248 9e-61 >seq36 Length=80385 Score = 248 bits (274), Expect = 9e-61 Identities = 603/899 (67%), Gaps = 29/899 (3%) Strand=Plus/Plus Query 21201 CTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATG 21260 || |||| || || |||||||| ||||| ||||| | ||||||||||||||||| Sbjct 37855 CTTTTTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATG 37914 Query 21261 GATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAA 21320 |||||| | || ||| ||| | || | | | |||| | ||||||||| |||| Sbjct 37915 GATTTTTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCACAA 37974 Query 21321 ATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTT 21380 ||||||| || || | ||| | | ||||||||| || ||||| | || || | || | Sbjct 37975 ATTCTATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGT 38034 Query 21381 TTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATG 21440 ||||||||| ||||||||| || ||||| | || ||| | | || || || Sbjct 38035 CTGTCAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCTTTAATGCTTT-TG 38093 Query 21441 TACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTT 21500 ||| || || |||| |||| | |||||||||||| ||| | ||| | Sbjct 38094 CACTTATTTC-TAATGTACTTGTGTAAA----AGACATGCAAAATCTGTATGAAGACCCT 38148 Query 21501 CATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTA 21560 | ||||| || | |||||| |||||||||| || ||||| |||||||||||||| | Sbjct 38149 CGTCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTTGA 38208 Query 21561 ACCAAAATATTGACGCAAATGCTCC--TGAAAAGAAAATGCCCTCAACGGCAGCAAATGC 21618 |||||| |||| ||||| | || |||||| |||| || || || |||||||| Sbjct 38209 GCCAAAAAATTGCAGCAAAAGAACCACTGAAAA--AAATTCCTTCTACACACGCAAATGC 38266 Query 21619 AACTAATC--GT-TCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTT 21675 || ||| || ||| | ||| || | | |||| ||| |||| |||||||| Sbjct 38267 CACGCATCTCGTGTCAAAAGAAGTA---TCGCT-TACAAT--CCACTTTTGTGCCCATTC 38320 Query 21676 TGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATC 21735 ||| |||| ||||| || | || || || || ||||||| ||||| || | Sbjct 38321 TGCTTTTTTCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTT 38380 Query 21736 TACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTAT 21795 ||| | || ||||||||| |||||||| |||||||| Sbjct 38381 ATAATCTGGTACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTAT 38440 Query 21796 CGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTG-AACCTCGGAATAAAATC 21854 || || ||||| ||||||||||| |||| || || || | ||| || |||||| Sbjct 38441 TGCAATTTGAAAGCCGTAAAAACACTTTGCTTC-CAAAATGGTAACATCATTTGAAAATC 38499 Query 21855 GTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTT 21914 || | || ||||||||||| |||||||| || ||||||||||| | | ||| Sbjct 38500 TTTCTGATAAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTTT 38559 Query 21915 TTATAAAATATCGTTCGTTATCTGTT-AATTTTTTCCAATCTAATAAATCTTTTGATAAA 21973 |||||||| || | ||||| | |||| | || || ||| | || || | ||| Sbjct 38560 TTATAAAAAATTGCTCGTT-TTTGTTGAGTTGATTAAAATGCATTATGTCAAAAGTTAAG 38618 Query 21974 TCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAG-CCTTTTTATACATAATCCAGATATC 22032 ||||||||||| |||||||| ||| | | | |||||||| | | ||| || || Sbjct 38619 TCTACTTCTTCTACAGTCCAAAAAGTAG-ATTCGTGTTTTTTATAAAAATCCCATATTTC 38677 Query 22033 ATTATATATTATTGGAAATATTACAAACCTGTTATTTGATTC--AACTAAAAGTGGTTC 22089 | |||| ||||||||||| ||| |||| | | |||||| | | ||||||||| Sbjct 38678 TTGATATTGTATTGGAAATAAAACATACCTCT--TGTGATTCTGGTCAAGAAGTGGTTC 38734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900387776880