Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq36 279 6e-70 >seq36 Length=80385 Score = 279 bits (308), Expect = 6e-70 Identities = 607/895 (68%), Gaps = 23/895 (3%) Strand=Plus/Plus Query 33033 TTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 ||| || || ||||| |||||||| ||||| | |||||||| |||||||| ||||| Sbjct 37859 TTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATGGATT 37918 Query 33093 GGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTC 33152 | ||| || | ||||| ||| ||| || | | || |||||| || || ||||| Sbjct 37919 TTTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCACAAATTC 37978 Query 33153 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGT 33212 ||| || | ||| | | |||||||||||| || | ||||||| | || | || Sbjct 37979 TATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGTCTGT 38038 Query 33213 AAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACT 33272 | ||| |||| ||| || || || || | | || | | ||| | ||| | |||| Sbjct 38039 CAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCTTTAATGCTTT-TGCACT 38097 Query 33273 CGGTGG--ATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCG 33330 | ||| | | ||| |||| | |||||| ||||| || ||||||||| Sbjct 38098 TATTTCTAATGTACT---TGTGTAAA----AGACATGCAAAATCTGTATGAAGACCCTCG 38150 Query 33331 TCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGC 33390 || || ||| ||||| || ||||| || ||||| ||||| | || | |||||| ||| Sbjct 38151 TCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTTGAGC 38210 Query 33391 CAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATA 33450 ||||| || | ||| || || ||| || || ||||||||||| ||||| || | Sbjct 38211 CAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGCCACG 38270 Query 33451 AGTCTCTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTC 33507 |||| || || | |||| || ||||||||||| ||||| || || || Sbjct 38271 CATCTCGTGTCAAAAGAAGTATCGCTTACA---ATCCACTTTTGTGCCCATTCTGCTTTT 38327 Query 33508 TTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 33567 || || | || || ||||||| |||||||| ||||| |||| || ||| |||| Sbjct 38328 TTCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTATAATCT 38387 Query 33568 TTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33627 || | || || ||||| ||||||||| ||||| |||||||| || || || Sbjct 38388 GGTACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTATTGCAATT 38447 Query 33628 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCC 33687 ||||| ||||| ||||| | || || ||| || || | |||||| ||| | Sbjct 38448 TGAAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAATCTTTCTGAT 38507 Query 33688 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33747 ||||||||||| || ||||| || || |||||||| || | || |||||||||| Sbjct 38508 AAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTTTTTATAAAA 38567 Query 33748 TATTTTTCGTCTGGTGTT-AGTTTATTCCAAT-CATTGATATCTTTAGATATATCTACTT 33805 ||| |||| | |||| |||| ||| ||| |||| || || || || ||||||| Sbjct 38568 AATTGCTCGT-TTTTGTTGAGTTGATTAAAATGCATT-ATGTCAAAAGTTAAGTCTACTT 38625 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 |||| || |||||||| | | || |||||||| | | ||| || || | ||||| Sbjct 38626 CTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTTCTTGATATT 38685 Query 33866 GGATTGGGAAAATAACAAATCTATTTGGATT-TGGTGCAAGGATGGGTTCCATAA 33919 | ||||| || | |||| | || || |||| |||| |||| | |||| ||||| Sbjct 38686 GTATTGGAAATAAAACATACCTCTTGTGATTCTGGT-CAAGAAGTGGTT-CATAA 38738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946717215920