Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq36 288 1e-72 >seq36 Length=80385 Score = 288 bits (318), Expect = 1e-72 Identities = 589/863 (68%), Gaps = 33/863 (4%) Strand=Plus/Plus Query 92819 CttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTCACTAGTG---ATT 92875 ||||||| |||||||||||||| ||||| |||||| | | ||| || | | Sbjct 37855 CTTTTTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAA-GTTTTCCATAAAATCAAAT 37913 Query 92876 GGATTCTTGGCGTTATAATACTTTTCACCGATCAACT-CGTACAATAATCTATCAGCTAC 92934 ||||| || | || || ||||||| | | | | | || || | |||||| || || Sbjct 37914 GGATTTTTCGTATTGTA-TACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCAC 37972 Query 92935 AAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACAGGTAGAGC 92994 ||||||||||||||| ||| | | |||||||||||| | | || || |||| || Sbjct 37973 AAATTCTATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGC 38032 Query 92995 GTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATTACTCTACT 93054 ||| ||||| || ||||| || ||| | || ||||| | | || || | | || Sbjct 38033 GTCTGTCAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCTTTAATGCT--- 38089 Query 93055 ATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACC 93114 |||| | ||| || | || |||| | | || ||||| || ||||| | ||| Sbjct 38090 -TTTGCACTTATTTCTA--ATGTACTTGTGTAAAAGACATGCAAAATCTGTATGAAGACC 38146 Query 93115 TTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTT 93174 ||||| | || || | ||||| ||||||| ||||| | || ||||| || || Sbjct 38147 CTCGTCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTT 38206 Query 93175 GAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGC 93234 ||||||||| |||| ||||||| |||| ||||| || ||||| || |||||||| Sbjct 38207 GAGCCAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGC 38266 Query 93235 CACA-ATA-CGTTCGGCAAAATTTGCGGAATTACTGCTGA---TCCATTTTAAAGCCCAA 93289 ||| || ||| | ||||| ||| || ||| | |||| ||| ||||| Sbjct 38267 CACGCATCTCGT--GTCAAAA------GAAGTATCGCTTACAATCCACTTTTGTGCCCAT 38318 Query 93290 TCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCG 93349 || |||||||||||||| |||| |||| || || ||||| || |||| | |||| Sbjct 38319 TCTGCTTTTTTCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCT 38378 Query 93350 TCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCC 93409 | ||||| ||| |||| || || || ||||||||||| ||||| | || || Sbjct 38379 TTATAATCTGGTACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCT 38438 Query 93410 ATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAAT 93469 ||||||||||| || ||||| ||||| | |||||| || || || | |||||| Sbjct 38439 ATTGCAATTTGAAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAAT 38498 Query 93470 CTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGC 93529 || ||| | ||||||||| || || ||||| ||||| |||||||| || | | Sbjct 38499 CTTTCTGATAAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTT 38558 Query 93530 TTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAG- 93588 ||||||||| || ||| | | || || | || ||| | || | | | |||| Sbjct 38559 TTTATAAAAAATTGCTCGTTTTTGTTGAGTTGATTAAAAT-GCAT---TATGTCAAAAGT 38614 Query 93589 ---ATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || |||||||| ||||||||||| | | ||| |||||| || | ||||||||| Sbjct 38615 TAAGTCTACTTCTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATAT 38674 Query 93646 GTCTTGATATTGAATTGGAAATA 93668 ||||||||||| |||||||||| Sbjct 38675 TTCTTGATATTGTATTGGAAATA 38697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860368432880