Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq18 390 3e-104 >seq18 Length=4217 Score = 390 bits (432), Expect = 3e-104 Identities = 656/948 (69%), Gaps = 1/948 (0%) Strand=Plus/Plus Query 20133 TTTTCAAAATATATCGCGGGCGtttttttATTTCTGTATAAATTCTTCCGATGTACTCAC 20192 |||| |||||||||| || ||||| || |||| |||| || || || || || || | Sbjct 1871 TTTTTAAAATATATCTTGGTCGTTTCTTAGTTTCCATATAGATCCTACCAATATATTCCC 1930 Query 20193 CAAGGACACCAATGCCTATTAACTGTACTCCTCCAAGGAAAAGTATTGAAACTAACAATG 20252 | | || || || ||||| | ||||| || || | || || ||||||||||| |||| Sbjct 1931 CTAAAACGCCTATTCCTATAAGTTGTACACCACCTAAAAATAGGATTGAAACTAATAATG 1990 Query 20253 ATGGATATCCTGGAACACTATTTCCGAATAGAAGCTTGTCTAAAATCATCCATGCTCCAT 20312 | ||||||||| ||| |||||| | | || | |||||||||| ||| | |||| Sbjct 1991 ACGGATATCCTTTTACATCATTTCCCCAAATAATAGTTTCTAAAATCAACCAAGAACCAT 2050 Query 20313 AAATGAAGGACGCGCTGGCAACAGCAAGACCGATGTAGGTCCACATTCGCAACGGGAATG 20372 | | || || | | |||| ||| || | || ||||| |||| ||| || | | Sbjct 2051 ATAAAAAAGATAAGGTTGCAATTAAAAGTCCAACATATGTCCAAATTCTCAAAGGTATCG 2110 Query 20373 TTGAGAAACTTGTTATACCTTCAAGTGCCAGGTTCCATAGTTTCCAGCCATTAAATTTTG 20432 |||| |||||||| | ||||| | ||| || ||||| || ||||| |||||||| || | Sbjct 2111 TTGAAAAACTTGTAACCCCTTCTAATGCAAGATTCCAAAGCTTCCACCCATTAAACTTGG 2170 Query 20433 AGTTGCCGGCAACACGCTCAGCCCTTGAATACTCAACAACATCAATTTTTCCACCTACCC 20492 | || ||| | || | ||| ||||||||||| || |||||||| |||| Sbjct 2171 TTTGACCAGCACTTCTTGTAGGACGAACATATTCAACAACATCGATCTTTCCACCAACCC 2230 Query 20493 ATGACAAAACGCCTTTCATGAATAGATTGCGCTCAGGAAGTAGTTTTATGTTTTCAACAA 20552 | || | || |||||||| || || || ||||| ||| || || ||||| |||| Sbjct 2231 AAGAAAGTACTCCTTTCATAAAAAGGTTTATTTCAGGTAGTCTCTTAATATTTTCTACAA 2290 Query 20553 CTTCTCGCGACATCAAGCGGAAATCACCAACGTTTTCTTCGATTTTAGGGTTGCTAATTT 20612 |||| ||||| || || ||||||||||| |||||||| |||||||| |||||| | Sbjct 2291 TCTCTCTAGACATTAATCGAAAATCACCAACATTTTCTTCAATTTTAGGTGAGCTAATCT 2350 Query 20613 TGTTGTGTAGCTTATAGAACCACTCAGCCGATTTGCGCTTTAGCCTTCCATCGGTAGAGC 20672 |||| |||| ||| || | ||||| | | |||| | ||| ||| | Sbjct 2351 TGTTATGTAATCGATAAAATGCCAAAGCCGTTGATCTTTTTAAATAGCTATCAGTACTTC 2410 Query 20673 GGTCTGCTCTTTTAGCCAGAACCATATCAGCGCCATCTAGCCACCTATCAATGAGTTTAG 20732 ||| || |||||| | |||||||||||| ||| | ||||| | |||| ||| | Sbjct 2411 TGTCACTTCGTTTAGCTAAAACCATATCAGCTCCAGCCTGCCACTTTGCAATCAGTAGCG 2470 Query 20733 GAATAACATCGATAGGGTCTTGCAGATCAACGTCGATTGGGATAACAGCTTCACCAGTAG 20792 ||||||| || || ||||| || || ||||| || ||||| |||||||| |||||||| | Sbjct 2471 GAATAACCTCAATGGGGTCCTGAAGGTCAACATCAATTGGAATAACAGCATCACCAGTTG 2530 Query 20793 CATTATCAAGACCTGCGAATAGGGCTGGCTCTTTGCCAAAGTTTCTAGTGAACGATAGTG 20852 ||| || | ||||| |||| || |||||||| |||||||||||||| || || || Sbjct 2531 CATGCTCTATCCCTGCAAATAAAGCAGGCTCTTTACCAAAGTTTCTAGTAAAACTTAATG 2590 Query 20853 GTACCACTAATTTATCAGATACAGCAAGCGCATTGATGATTGATTCTGTCGAATCGCTGC 20912 | || || ||||| | | | || | || || ||| ||||||| || | | Sbjct 2591 CTCTAACAAACTTATCTGTAAGTGATAGTTCGTTAATAATTAATTCTGTTTTGTCTTTAC 2650 Query 20913 TTCCGTCATTGATGAAGACTATCTCAACTTCATGCTCCTTTAGGCCTTCAAACTCGCGTA 20972 | || ||||| ||||| | ||||| || |||| | ||| ||| || | | | | Sbjct 2651 TACCATCATTAATGAAAATGATCTCCACATCATATTTCTTAAGGGGAGCATAATTTCTAA 2710 Query 20973 CCGTTTTATAAAAAATAGGTATCGTGGCCTCTTCGTTAAAGACCGGAACGACTAAAGAAA 21032 | | | |||||||||||| || | | ||||| ||||| || ||||| | || ||| | Sbjct 2711 CAGCGTCATAAAAAATAGGGATAGCTTCTTCTTCATTAAAAACAGGAACAATTAGAGATA 2770 Query 21033 TTTTCATTTCGTATCCCTAAAGACAATGAATTTTGAATAGATAAACCC 21080 |||||| | | | |||||| || | |||||||||| | ||| || Sbjct 2771 TTTTCA-TACTACTTCCTAAACACTAAATATTTTGAATATAAAAAACC 2817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137529498743832