Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq18 295 2e-75 >seq18 Length=4217 Score = 295 bits (326), Expect = 2e-75 Identities = 629/936 (67%), Gaps = 9/936 (1%) Strand=Plus/Plus Query 1445 TTAAATTTCACT-TTTAAAACCCTTACGCTTTAATATGTATTTAGGCCGCTGTTTGGTTT 1503 ||| | |||| | |||||| | ||| ||||| || ||| | || || | || |||| Sbjct 1848 TTATACTTCATTATTTAAATCTCTT----TTTAAAATATATCTTGGTCGTTTCTTAGTTT 1903 Query 1504 CTATGTAAATTCTACCAATATATTCTCCAAGAATACCTATTCCTATCAATTGAACGCCAC 1563 | || || || |||||||||||||| || | || ||||||||||| | ||| || |||| Sbjct 1904 CCATATAGATCCTACCAATATATTCCCCTAAAACGCCTATTCCTATAAGTTGTACACCAC 1963 Query 1564 CCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCAGGAACATTATTT--CCAAATAT 1621 | | || || | ||||| | | ||||| || || |||| |||| ||||||| Sbjct 1964 CTAAAAATAGGATTGAAACTAATAATGACGGATATCCTTTTACATCATTTCCCCAAATAA 2023 Query 1622 TAATTTATCAATAATCATCCATGCACCGTAAAGGAATGACATACCTGCAATAAACAATCC 1681 || || || | ||||| ||| | ||| || | || || | |||||| || | ||| Sbjct 2024 TAGTT--TCTAAAATCAACCAAGAACCATATAAAAAAGATAAGGTTGCAATTAAAAGTCC 2081 Query 1682 AATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAAGTTATTCCTTCCAGCGCCAG 1741 || || ||||| || | | || | ||||| ||| || | ||||| | || || Sbjct 2082 AACATATGTCCAAATTCTCAAAGGTATCGTTGAAAAACTTGTAACCCCTTCTAATGCAAG 2141 Query 1742 ATTCCATAATTTCCAGCCATTGAATTTTGAATCGCCGGCAACACGTTCGGCACGGGCATA 1801 |||||| | ||||| ||||| || || | | || ||| | | | ||| |||| Sbjct 2142 ATTCCAAAGCTTCCACCCATTAAACTTGGTTTGACCAGCACTTCTTGTAGGACGAACATA 2201 Query 1802 TTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCACACCCTTCATAAACAAGTTGCG 1861 || ||||||||| | ||||| ||||||||| || || || |||||||| | ||| Sbjct 2202 TTCAACAACATCGATCTTTCCACCAACCCAAGAAAGTACTCCTTTCATAAAAAGGTTTAT 2261 Query 1862 TTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCTCATTAACCGAAAGTCGCCAAC 1921 ||| || | | || || || || |||| | | | |||||| ||||| || ||||| Sbjct 2262 TTCAGGTAGTCTCTTAATATTTTCTACAATCTCTCTAGACATTAATCGAAAATCACCAAC 2321 Query 1922 ATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAGCTTATAAAACCACTCAGCTGT 1981 ||||||||| ||||| || ||| || || || || | |||||| | ||| || Sbjct 2322 ATTTTCTTCAATTTTAGGTGAGCTAATCTTGTTATGTAATCGATAAAATGCCAAAGCCGT 2381 Query 1982 CTTACGCTTCAACCTCCCATCAGTTGAGCGGTCTGAGCGCTTAGCCAGCACCATATCCGC 2041 | || || | |||||| | ||| || ||||| | |||||||| || Sbjct 2382 TGATCTTTTTAAATAGCTATCAGTACTTCTGTCACTTCGTTTAGCTAAAACCATATCAGC 2441 Query 2042 GCCAGCCTGCCACTTCTCAATGAGATGGGGGATAACTTCTATCGGATCCTGTAAATCGAC 2101 |||||||||||||| |||| || | || ||||| || || || ||||| | || || Sbjct 2442 TCCAGCCTGCCACTTTGCAATCAGTAGCGGAATAACCTCAATGGGGTCCTGAAGGTCAAC 2501 Query 2102 ATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAGACCCGCGAAAAGAGCAGGTTC 2161 |||||| ||||| || ||||| || |||||||| || | || || || | |||||| || Sbjct 2502 ATCAATTGGAATAACAGCATCACCAGTTGCATGCTCTATCCCTGCAAATAAAGCAGGCTC 2561 Query 2162 TTTACCGAAGTTTCGCGTAAACGAAAGCGGAATAACGAGCGGATCAGATGCAGCTATTTT 2221 |||||| ||||||| ||||| | | |||| | | ||| | | || || Sbjct 2562 TTTACCAAAGTTTCTAGTAAAACTTAATGCTCTAACAAACTTATCTGTAAGTGATAGTTC 2621 Query 2222 GTTAATTATTGATTCAGTCGCATCTTTGCTTCCGTCGTTGATGAAAACAATCTCAACTTC 2281 |||||| ||| |||| || ||||| || || || || ||||||| ||||| || || Sbjct 2622 GTTAATAATTAATTCTGTTTTGTCTTTACTACCATCATTAATGAAAATGATCTCCACATC 2681 Query 2282 ATACGGTTTTAACTCTTCAAACTCGCGAACCGTTTTATAGAAAATAGGTATCGTGGCTTC 2341 ||| || | || | | | ||| | | ||| |||||||| || | |||| Sbjct 2682 ATATTTCTTAAGGGGAGCATAATTTCTAACAGCGTCATAAAAAATAGGGATAGCTTCTTC 2741 Query 2342 TTCATTGAAGACCGGAACGACTAACGAGATTTTCAT 2377 |||||| || || ||||| | || || |||||||| Sbjct 2742 TTCATTAAAAACAGGAACAATTAGAGATATTTTCAT 2777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128287905547960