Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_019927.1 Length=47611 Score E Sequences producing significant alignments: (Bits) Value seq18 307 3e-79 >seq18 Length=4217 Score = 307 bits (340), Expect = 3e-79 Identities = 641/949 (68%), Gaps = 7/949 (1%) Strand=Plus/Plus Query 6020 TTTAAAATATATCGAGGGCGCTGCTTAACCTCAGTGTAAATTCTTCCAATATATTCCCCC 6079 ||||||||||||| || || | |||| || | || || || |||||||||||||| Sbjct 1873 TTTAAAATATATCTTGGTCGTTTCTTAGTTTCCATATAGATCCTACCAATATATTCCCCT 1932 Query 6080 AGGACACCTATCCCTATAAGCTGGACGCCGCCAAGGAAAAGGATAGAAACCAGAAGGGAT 6139 | || ||||| |||||||| || || || || | || ||||| ||||| | | || Sbjct 1933 AAAACGCCTATTCCTATAAGTTGTACACCACCTAAAAATAGGATTGAAACTAATAATGAC 1992 Query 6140 GGATATCCGCGAACCGGGTTGCCAAAGGCAAGCGTGTCGACAATCATCCACGCTCCATAG 6199 |||||||| || || || | || || || | ||||| ||| | ||||| Sbjct 1993 GGATATCCTTTTACATCATTTCCCCAAATAATAGTTTCTAAAATCAACCAAGAACCATAT 2052 Query 6200 AGAAATGACAGCCCGGCCACTAACAACCCAATGTACGTCCACATTCTCAGAGGAAAGGTC 6259 | ||| || | || | ||| | |||| || ||||| ||||||| ||| | || Sbjct 2053 AAAAAAGATAAGGTTGCAATTAAAAGTCCAACATATGTCCAAATTCTCAAAGGTATCGTT 2112 Query 6260 GAGAAGCTGGTAATACCCTCAAGCGCGAGATTCCAGAGTTTCCACCCGTTAAATTTGGTG 6319 || || || |||| || || | || |||||||| || |||||||| ||||| ||||| Sbjct 2113 GAAAAACTTGTAACCCCTTCTAATGCAAGATTCCAAAGCTTCCACCCATTAAACTTGGTT 2172 Query 6320 CTTCCTGCCACGCGTTCAGCGCGCGAATACTCAACTACGTCAGTGCGTCCGCCGACCCAT 6379 || || | | || || ||| ||||| || || | ||| || ||||| Sbjct 2173 TGACCAGCACTTCTTGTAGGACGAACATATTCAACAACATCGATCTTTCCACCAACCCAA 2232 Query 6380 GACAGGACTCCTTTCATGAACAGGTTCCGCTCAGGCATTAGCTTGATGTTTTCTACTACC 6439 || || ||||||||||| || ||||| ||||| | | ||| || |||||||| | | Sbjct 2233 GAAAGTACTCCTTTCATAAAAAGGTTTATTTCAGGTAGTCTCTTAATATTTTCTACAATC 2292 Query 6440 TCACGAGACATCAGGCGAAAATCACCCACGTTTTCCTCGATTTGTGGGTTGCTTATTTTG 6499 || | |||||| | ||||||||||| || ||||| || |||| || ||| || ||| Sbjct 2293 TCTCTAGACATTAATCGAAAATCACCAACATTTTCTTCAATTTTAGGTGAGCTAATCTTG 2352 Query 6500 TTGTGCAGCTTATAGAACATTTCAGCGCTTTTG--CGCTTCAGGTGACCGTCAGTGGAGC 6557 || || | | | || || || || ||| | || | | | ||||| | Sbjct 2353 TTATGTA--ATCGATAAAATGCCAAAGCCGTTGATCTTTTTAAATAGCTATCAGTACTTC 2410 Query 6558 GGTCTGTGCGTTTAGCCAGTACCATATCTGCGCCAGTCTGCCAGCGCTG-TATCAACTGC 6616 ||| | |||||||| | |||||||| || |||| |||||| | || |||| || Sbjct 2411 TGTCACTTCGTTTAGCTAAAACCATATCAGCTCCAGCCTGCCA-CTTTGCAATCAGTAGC 2469 Query 6617 GGGATAACATCAATTGGGTCCTGCAGGTCGACGTCGATTGGAATCACCGCCTCGCCGGTG 6676 || ||||| ||||| |||||||| ||||| || || |||||||| || || || || || Sbjct 2470 GGAATAACCTCAATGGGGTCCTGAAGGTCAACATCAATTGGAATAACAGCATCACCAGTT 2529 Query 6677 GCATGGTCAAGGCCTGCAAATAACGCTGGCTCCTTTCCGAAATTGCGTGTGAAGGATAGG 6736 ||||| || | ||||||||||| || ||||| || || || || | || || || Sbjct 2530 GCATGCTCTATCCCTGCAAATAAAGCAGGCTCTTTACCAAAGTTTCTAGTAAAACTTAAT 2589 Query 6737 GGCACAACAAGCGGATCTGACACGGCCAGCGCATTGATAATCGACTCTGTAGCGTCTTTG 6796 | ||||| | ||||| | | || | || ||||| | ||||| |||||| Sbjct 2590 GCTCTAACAAACTTATCTGTAAGTGATAGTTCGTTAATAATTAATTCTGTTTTGTCTTTA 2649 Query 6797 CTGCCGTCATTGATAAATACGATTTCCACCTCAAACGATTTGAGCGGTTCATATTCTCTG 6856 || || ||||| || || | ||| ||||| ||| | || || || |||| | ||| Sbjct 2650 CTACCATCATTAATGAAAATGATCTCCACATCATATTTCTTAAGGGGAGCATAATTTCTA 2709 Query 6857 ACGGTTTTATAGAAAATAGGTATTGTGTCTTCTTCATTGAAGACAGGAACCACGAGTGAA 6916 || | | ||| |||||||| || | ||||||||||| || |||||||| | || || Sbjct 2710 ACAGCGTCATAAAAAATAGGGATAGCTTCTTCTTCATTAAAAACAGGAACAATTAGAGAT 2769 Query 6917 ATCTTCATTTTGCTTCCCTGAAGACAATGTATTTCGAATAGATAAACCC 6965 || ||||| | ||| ||| || || | ||||| ||||| | ||| || Sbjct 2770 ATTTTCATACTACTT-CCTAAACACTAAATATTTTGAATATAAAAAACC 2817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152233487918012