Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq36 127 1e-23 seq34 122 6e-22 seq32 122 6e-22 seq35 104 2e-16 seq23 104 2e-16 >seq36 Length=80385 Score = 127 bits (140), Expect = 1e-23 Identities = 249/360 (69%), Gaps = 16/360 (4%) Strand=Plus/Minus Query 594441 GTACTTGCATTTTTTGCATCAGCAGATGGTATTGTAAATGCAAATATAAAAGAAA-ATTT 594499 || |||||||||||||| || ||||||| |||||||||| |||| || ||||| |||| Sbjct 38554 GTTCTTGCATTTTTTGCTGCATCAGATGGAATTGTAAATGAAAATTTATCAGAAAGATTT 38495 Query 594500 --AATTGATGTTGTTAAAATTAAAGAAGCAGAATGTGCATATGGTAAACAATTTGAAATG 594557 || ||||||| | ||| |||||| | ||| || || ||| ||| ||| Sbjct 38494 TCAAATGATGTT---ACCATTTTGGAAGCAAAGTGTTTTTACGGCTTTCAAATTGCAATA 38438 Query 594558 GAAAATGCACATGGAGAAATGTATTCATTGATGTTAGATACATTTGTAAAAGATGATATA 594617 ||||| |||| ||||||||||||| || |||| ||||| ||| |||| ||| | Sbjct 38437 GAAAACATACATTCAGAAATGTATTCAAAATTGATAGAAACATTGGTACCAGATTATAAA 38378 Query 594618 CTTAAGGATAAATTA----ATTAAAGCCATAAAAACTATGCCAAGTATTaaaaaaaaaGC 594673 || | |||||| |||| || ||| ||| || ||| ||||| |||||||| Sbjct 38377 ---GAGCA-AAATTATCTTTTTAATGCAATAGAAAACATACCAGCAATTAAGAAAAAAGC 38322 Query 594674 AGATTGGTGTAAAAAATGGATTAAATCTGATAAAACTTATG-CACATAAATTAGTTGCAT 594732 ||| ||| |||| |||||| | |||| ||| || ||| | || || |||| Sbjct 38321 AGAATGGGCACAAAAGTGGATTGTAAGCGATACTTCTTTTGACAC-GAGATGCGTGGCAT 38263 Query 594733 TTGCTATTGTTGAAGGTGTATTTTTTAGTGGATCATTCGCGTCGATATTCTGGTTAAAAA 594792 |||| ||| ||||| | ||||| ||||| || || || | || || ||| | |||| Sbjct 38262 TTGCGTGTGTAGAAGGAATTTTTTTCAGTGGTTCTTTTGCTGCAATTTTTTGGCTCAAAA 38203 >seq34 Length=123199 Score = 122 bits (134), Expect = 6e-22 Identities = 153/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| || ||||| ||||| || | ||||||||| | || ||||| ||||| | Sbjct 109607 CAAG-TGCAGTGTGCTTTCCTTCTGGATATTATAATCTGATAATGTTCTTCCGTCTTCCA 109665 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | || ||||| ||||||||||| | || || ||||||||||||||||| |||||||||| Sbjct 109666 GCTGTTTTCCTGCAAAAATAAGTCTCTGCTGCTCAGGAGGAATTCCTTCTTTGTCTTGAA 109725 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| ||||||| |||||| |||| | | | | | | ||| ||||| || ||| Sbjct 109726 TCTTTGCTTTGACATTTTCAATGCTATCCGAGCTTTCTACCTCCAA-AGTAATTGTCTTA 109784 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || || || Sbjct 109785 CCAGTCAGTGTCTTTACAAATATCTG 109810 >seq32 Length=103007 Score = 122 bits (134), Expect = 6e-22 Identities = 153/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| || ||||| ||||| || | ||||||||| | || ||||| ||||| | Sbjct 13594 CAAG-TGCAGTGTGCTTTCCTTCTGGATATTATAATCTGATAATGTTCTTCCGTCTTCCA 13536 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | || ||||| ||||||||||| | || || ||||||||||||||||| |||||||||| Sbjct 13535 GCTGTTTTCCTGCAAAAATAAGTCTCTGCTGCTCAGGAGGAATTCCTTCTTTGTCTTGAA 13476 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| ||||||| |||||| |||| | | | | | | ||| ||||| || ||| Sbjct 13475 TCTTTGCTTTGACATTTTCAATGCTATCCGAGCTTTCTACCTCCAA-AGTAATTGTCTTA 13417 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || || || Sbjct 13416 CCAGTCAGTGTCTTTACAAATATCTG 13391 Score = 122 bits (134), Expect = 6e-22 Identities = 153/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 480565 CAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAA 480624 |||| || ||||| ||||| || | ||||||||| | || ||||| ||||| | Sbjct 23146 CAAG-TGCAGTGTGCTTTCCTTCTGGATATTATAATCTGATAATGTTCTTCCGTCTTCCA 23204 Query 480625 GTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAA 480684 | || ||||| ||||||||||| | || || ||||||||||||||||| |||||||||| Sbjct 23205 GCTGTTTTCCTGCAAAAATAAGTCTCTGCTGCTCAGGAGGAATTCCTTCTTTGTCTTGAA 23264 Query 480685 TCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAAGGGTAATAGTTTTA 480743 ||||| ||||||| |||||| |||| | | | | | | ||| ||||| || ||| Sbjct 23265 TCTTTGCTTTGACATTTTCAATGCTATCCGAGCTTTCTACCTCCAA-AGTAATTGTCTTA 23323 Query 480744 CCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || || || Sbjct 23324 CCAGTCAGTGTCTTTACAAATATCTG 23349 >seq35 Length=128636 Score = 104 bits (114), Expect = 2e-16 Identities = 318/489 (65%), Gaps = 11/489 (2%) Strand=Plus/Plus Query 355240 GTTGAATATCCAGTGCCAATACCTTCTGTTCCATTAACTAAAATCATTGGAATTACAGGT 355299 ||||| | ||||| ||||| ||||| |||||||| | |||| | ||| | | || Sbjct 43388 GTTGACCACCCAGTCCCAATTCCTTCAGTTCCATTTATCAAAACGAGTGGTAAAATCGGC 43447 Query 355300 ACATAAAATACTGGTTCAATCATTTTATTATCTTCAAATTGATGTTGCAATACATCAAAA 355359 |||||| ||||||| ||||| | | |||||||| || | ||| ||||| || | Sbjct 43448 ACATAATATACTGGCTCAATTTTCATGTTATCTTCTGTCTGTTCTTGTAATACTGGAATA 43507 Query 355360 TCATGTTGTATGAAAATATATTTAGTTAATTGATTGAGTTGTGTGAAGATATATCGTGCA 355419 || |||| ||||| || | || | | |||| | | || || || || | | | Sbjct 43508 TCGTGTTCATGGAAAAGCAATCTTGTAAGTGGATTTAAATTGGTAAAAATGTACCTCGGA 43567 Query 355420 CTTGCATTATCTTTGCCTCCACTTAATCTTGTACCAAATTGACCATTGGGAAGTAATAAA 355479 ||| ||||||| || || | ||| | ||||||||||||| | || | | ||| Sbjct 43568 GAGGCACTATCTTTACCCCCCAAAAGTCTAGAACCAAATTGACCAATTGGTAAAAGCAAA 43627 Query 355480 TTTATGTTGTTACTTCCAACATAATTTTGTGCCATTTTTATTATAGTTTCAGTCATTGAC 355539 ||||||||||| || || ||| | | || || | || || || ||| | | || Sbjct 43628 TTTATGTTGTTGCTCCCTACAAAGTCATGCGCTAAATTGATAATTGTTGATGATAACGAT 43687 Query 355540 TGTTCTCCATGATGATATTTAGTTCTTTTCGAAACTGCACCTTGTAATTCAGATACTTTA 355599 ||| || ||||||||| || || ||||| |||| || | | |||||| Sbjct 43688 GCTTCACCGTGATGATATGCAGAGTGTTCTGAAACATAACCTACTAGCTGTGCTACTTTT 43747 Query 355600 ATTTCTTCTTTATAAATACCTTCTTCCTCTGAACCAT---ACAAT-ACTTTTCTTTGAGA 355655 ||||| | || ||||| ||| | | || ||| | ||| |||||||||||| Sbjct 43748 ATTTCAT-TTCTTAAAT------TTCTTTTAAAACATGAAAAAATAACTTTTCTTTGACC 43800 Query 355656 TGGTTTAAGACCGTCAGCTATGTTAGGTATTGATCTCATATTATCATCGACTGAAAATGA 355715 || || | ||| || || ||| || || | || ||||| | | ||||||| | Sbjct 43801 AGGCTTTAAACCATCGATTACAGAAGGAATAGAACGTATGTTATCCGCCATTGAAAATAA 43860 Query 355716 AATAAGTTC 355724 |||||| || Sbjct 43861 AATAAGCTC 43869 Score = 98.7 bits (108), Expect = 6e-15 Identities = 231/344 (67%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 356239 GAAGGCCAAAAACGATGAATTAAATTCATTATTAATCCTTTAATATGATATCCATCAACG 356298 ||||| ||||| ||| | ||||| ||||| ||||||||||| ||| | ||||||| Sbjct 44258 GAAGGGAAAAAATGATCTAAAAAATTAATTATCAATCCTTTAATGTGAGAACCATCAAAA 44317 Query 356299 TCTTGATCTGCTAAAATCATAATACTACCATACCTAAGTTCTTTAAG-ATCATTATATAC 356357 || ||||||| | ||||| || ||||| ||||| | ||| || |||| Sbjct 44318 TCCTGATCTGTCATTATCATTATGTGCCCATATCTAAG-AGTGGAAGTGTCTGAATATGT 44376 Query 356358 TTTTCCTTGCTCTAAACCAACAAttttttttATAGCAGTTATTTCTTCATTACTTGCGAC 356417 ||| || || | | || | |||||||| || || |||||||| |||| | | Sbjct 44377 TTTGCCATGTTGCAGTCCTAATATTTTTTTAATTGCGCTTATTTCTGCATT--CTCCATT 44434 Query 356418 AATTGCTGGACTTTTGGTT--CTTACATTTAGTGGTTTTCCTTTTAATGGGAAAATACCA 356475 | ||||| | | || || || |||||||| | || || |||||| || | |||| Sbjct 44435 ATTTGCTTGTTTGCTGCTTCCCTCACATTTAGCAGCTTACCACGTAATGGAAACACACCA 44494 Query 356476 TAATAATCTCTTCCGACAACATTTAATCCAGACATAGCAAATGCTTTAGCTGAATCTCCT 356535 || | ||||| || || || |||| || | | || |||| ||| || ||||| ||| Sbjct 44495 TACTTGTCTCTACCAACGACGCTTAAACCTGCAACTGCCAATGTTTTTGCAGAATCACCT 44554 Query 356536 TCAGTAAGAATTAAAGTACATTTATATCCTTCTTTTGTTCCAGC 356579 || || | ||| | || |||| | | | ||||||||| || Sbjct 44555 TCTGTCAAAATAAGTGTGCATTCGGAACTCTTTTTTGTTCCTGC 44598 >seq23 Length=240858 Score = 104 bits (114), Expect = 2e-16 Identities = 165/230 (72%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 297421 GCAGATTTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTT 297480 || ||||||||| |||| |||||| |||||||| || ||||||||||| || || Sbjct 117569 GCTGATTTTATAGGAGAAGGAATTGACCAAACAAGGGGGTGGTTTTATACATTGCATGTA 117628 Query 297481 CTTTCTACAGCTATATTTAACAAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTT 297540 | || ||| | ||| | ||| || ||||||||||| ||||||| || || || Sbjct 117629 ATATCAACAATGTTGTTTGATTTACCTGCGTTTAAAAATGTGATTGTTAACGGCATAGTA 117688 Query 297541 AACGCAGCTGATGGACAAAAAATG-TCAA-AAAGTAAAGGTAATTATCCTGATCCAAA-- 297596 |||| ||||| |||||||| ||| | |||| |||||||| |||||||| Sbjct 117689 TTGGCAGAAGATGGTAAAAAAATGAGCAAGCGATTAAA--AAATTATCCGGATCCAAAGG 117746 Query 297597 TATTTTGATGGATAAATATGGTGCAGATACTTTACGTCTTTAT-TTATTA 297645 | ||| | |||||||| || |||||| ||||| | ||||| |||||| Sbjct 117747 AAGTTT--TTGATAAATACGGAGCAGATGCTTTAAGGTTTTATCTTATTA 117794 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 269314 CCTGTAAATGGTGTCGCATCACCATATACTCCTTTAATAGCACATACTTTTCCTAATAGA 269373 |||| ||||||||| ||||| || | |||||| || || |||| |||||||| | | Sbjct 222285 CCTGAAAATGGTGTTGCATCTCCCTCCACTCCTGAAAGTGCTGATACCTTTCCTAACAAA 222226 Query 269374 CATTCAATCAATTGTCCAATGGTCATACGTTTTGGCATACAATTAGGATTAATAATAATA 269433 || || | || || ||||| |||||||| ||| || || ||||| ||||| || Sbjct 222225 CACTCTAACAGGTGACCAATTGTCATACGGGATGGTATTGCATGGGGATTTATAATTATG 222166 Query 269434 TCTGGCACAAGTCCAGATTTAGTAAATGGCATATCT 269469 ||||| | ||||| ||| ||||||||||| ||| Sbjct 222165 TCTGGTATCAGTCCTTCTTTGGTAAATGGCATGTCT 222130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268176540519176