Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq36 224 1e-53 seq34 123 4e-23 seq32 123 4e-23 >seq36 Length=80385 Score = 224 bits (248), Expect = 1e-53 Identities = 575/868 (66%), Gaps = 24/868 (3%) Strand=Plus/Plus Query 17880 CTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAA--TGATATTAAATTCATAAAATCAAA 17937 ||||||| || ||||||||||| ||||| ||||| | | || | |||||||||||| Sbjct 37855 CTTTTTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTT--TCCATAAAATCAAA 37912 Query 17938 TGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTAC 17997 |||||| | || || || ||||| | | |||| | ||||| | ||||||||| || Sbjct 37913 TGGATTTTTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCAC 37972 Query 17998 AAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGC 18057 |||||| | || ||| ||| | | |||||||| || | | || | |||| || Sbjct 37973 AAATTCTATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGC 38032 Query 18058 ATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG--TTTATTACCCTA 18115 || | | ||| ||||| ||||| || || | || | | |||| |||| | Sbjct 38033 GTCTGTCAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCTTTAAT------ 38086 Query 18116 GATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGT 18175 | ||||| | ||||| | |||| || | ||| | ||| |||||||| || || Sbjct 38087 GCTTTTG--CACTTATTTCTAATGTACTT---GTGTAAAAGACATGCAAAATCTGTATGA 38141 Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 | ||| || || ||||| || | ||| || ||| |||| || ||||| | ||||| Sbjct 38142 AGACCCTCGTCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTC 38201 Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295 ||||| |||||||| || | || ||| || | || || || || || || ||||| Sbjct 38202 TTTTTGAGCCAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCA 38261 Query 18296 AACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTGTGCCCAT 18355 || || | |||| ||||| | ||| ||| | ||||| |||||||||||| Sbjct 38262 AATGCCACGCATCTCGTGTCAAAA---GAAGTATCGCTTACAATCCACTTTTGTGCCCAT 38318 Query 18356 TCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCT 18415 ||| ||| || ||||| | ||||| |||||||| | || || || ||| Sbjct 38319 TCTGCTTTTTTCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCT 38378 Query 18416 TTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCC 18475 || ||||| || | || || || || ||||||||||| ||||||||| |||| Sbjct 38379 TTATAATCTGGTACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCT 38438 Query 18476 ATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTG-AATCTCGCTATAAAA 18534 || || || ||||| | ||||| | | || || | || | || || | |||| Sbjct 38439 ATTGCAATTTGAAAGCCGTAAAAACACTTTGCTTC-CAAAATGGTAACATCATTTGAAAA 38497 Query 18535 TCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATA 18594 ||||||| ||||| ||||| || || || || | | || |||||||| | ||| Sbjct 38498 TCTTTCTGATAAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCT 38557 Query 18595 TTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT-CCATTCATCTATATCTTTTGATA 18653 ||| || ||| || || || | ||||| | || || ||| ||| || | || Sbjct 38558 TTTTATAAAAAATTGCTCGTTTTTGTTGAGTTGATTAAAATGCAT-TATGTCAAAAGTTA 38616 Query 18654 GATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATAT 18713 || |||||||| |||||||||| |||||| | ||| || | | | || | Sbjct 38617 AGTCTACTTCTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTT 38676 Query 18714 CTTCATGTTGTATAGGAAATAATATATA 18741 ||| || |||||| |||||||| | ||| Sbjct 38677 CTTGATATTGTATTGGAAATAAAACATA 38704 >seq34 Length=123199 Score = 123 bits (136), Expect = 4e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || ||| ||||||| || || ||||| || || || ||| || Sbjct 109813 ATGCAGATATTTGTAAAGACACTGACTGGTAAGACAATTACTTTGGAGGTAGAAAGCTCG 109754 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| || || ||||| |||||||| || ||||| || || Sbjct 109753 GATAGCATTGAAAATGTCAAAGCAAAGATTCAAGACAAAGAAGGAATTCCTCCTGAGCAG 109694 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||| || || ||||| ||||| ||||| ||||||||||||| Sbjct 109693 CAGAGACTTATTTTTGCAGGAAAACAGCTGGAAGACGGAAGAACATTATCAGATTATA-- 109636 Query 156003 ATATCCA-AAG--AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||| ||| | || || || || || || || ||| | ||||| || Sbjct 109635 ATATCCAGAAGGAAAGC-ACACTGCACTTGGTTTTGAGACTGAGAGGAGG 109587 >seq32 Length=103007 Score = 123 bits (136), Expect = 4e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || ||| ||||||| || || ||||| || || || ||| || Sbjct 13388 ATGCAGATATTTGTAAAGACACTGACTGGTAAGACAATTACTTTGGAGGTAGAAAGCTCG 13447 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| || || ||||| |||||||| || ||||| || || Sbjct 13448 GATAGCATTGAAAATGTCAAAGCAAAGATTCAAGACAAAGAAGGAATTCCTCCTGAGCAG 13507 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||| || || ||||| ||||| ||||| ||||||||||||| Sbjct 13508 CAGAGACTTATTTTTGCAGGAAAACAGCTGGAAGACGGAAGAACATTATCAGATTATA-- 13565 Query 156003 ATATCCA-AAG--AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||| ||| | || || || || || || || ||| | ||||| || Sbjct 13566 ATATCCAGAAGGAAAGC-ACACTGCACTTGGTTTTGAGACTGAGAGGAGG 13614 Score = 123 bits (136), Expect = 4e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || ||| ||||||| || || ||||| || || || ||| || Sbjct 23352 ATGCAGATATTTGTAAAGACACTGACTGGTAAGACAATTACTTTGGAGGTAGAAAGCTCG 23293 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| || || ||||| |||||||| || ||||| || || Sbjct 23292 GATAGCATTGAAAATGTCAAAGCAAAGATTCAAGACAAAGAAGGAATTCCTCCTGAGCAG 23233 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | |||| ||| || || ||||| ||||| ||||| ||||||||||||| Sbjct 23232 CAGAGACTTATTTTTGCAGGAAAACAGCTGGAAGACGGAAGAACATTATCAGATTATA-- 23175 Query 156003 ATATCCA-AAG--AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||| ||| | || || || || || || || ||| | ||||| || Sbjct 23174 ATATCCAGAAGGAAAGC-ACACTGCACTTGGTTTTGAGACTGAGAGGAGG 23126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871432799200