Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq36 266 6e-66 seq34 132 9e-26 seq32 132 9e-26 >seq36 Length=80385 Score = 266 bits (294), Expect = 6e-66 Identities = 556/823 (68%), Gaps = 26/823 (3%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC--AATACATATAAT 49649 ||||||||||||||||||||| ||||| || || |||| | || || ||| ||||||| Sbjct 37901 CATAAAATCAAATGGATTTTTCGTATTGTA-TACTTTT-TGCTCTCCTAATGCATATAAC 37958 Query 49650 AATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709 | |||||| || |||||||| | || ||| ||| | | ||||||||| || | || Sbjct 37959 AGTCTATCTGCCACAAATTCTATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAA 38018 Query 49710 TTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattat 49768 ||| ||||||||| || |||| ||| |||||||||||||| || |||| ||| ||| Sbjct 38019 CTAACTGGTAATGCGTCTGTCAA-AAACTCTTTTTCTATTTCCACTGCTTCCATAACTAT 38077 Query 49769 cataattatattattttttgataatttatatttaatatgattcgcatatattaaACATGC 49828 | || | |||| | |||| | |||| | || | || | |||||| Sbjct 38078 GGCTTTAATGCT----TTTGC--ACTTATTTCTAATGTACTTG---TGTAAAAGACATGC 38128 Query 49829 AAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGG 49888 |||||| ||||| | |||||||||||| || |||| |||||| ||| |||| |||||| Sbjct 38129 AAAATCTGTATGAAGACCCTCGTCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGG 38188 Query 49889 CATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACC 49948 ||| |||||||||||||| |||||||| |||| |||||| || | || || || || Sbjct 38189 CATCAATCCTCTCTTTTTGAGCCAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCC 38248 Query 49949 CTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCA 50008 || |||||||||||||| | ||| | |||| | |||| || ||||| Sbjct 38249 TTCTACACACGCAAATGCCACGCATCTCGTGTCAAA---AGAAGTATCGCTTACAATCCA 38305 Query 50009 ATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 ||| ||||| ||||||||||| || || | ||||| |||||||| || ||||| | Sbjct 38306 CTTTTGTGCCCATTCTGCTTTTTTCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAG 38365 Query 50069 TTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGA 50128 | ||||| || | || ||| ||||||||||| || Sbjct 38366 ATAATTTTGCTCTTTATAATCTGGTACCAATGTTTCTATCAATTTTGAATACATTTCTGA 38425 Query 50129 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAAC 50188 ||||| ||| || || |||||||| ||||| ||||||| || ||| Sbjct 38426 ATGTATGTTTTCTATTGCAATTTGAAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAAC 38485 Query 50189 TTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAA 50248 || | |||| ||| |||||| ||| |||||| ||||| ||||| || || || Sbjct 38486 ATCATTTGAAAATCTTTCTGATAAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAA 38545 Query 50249 TGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATT--TTCCCAAGATTCA 50306 ||| | ||| ||| |||||| || || || | | || | || || || || || Sbjct 38546 TGCAAGAACTCTTTTTATAAAAAATTGCTCGTT-TTTGTTGAGTTGATT---AAAATGCA 38601 Query 50307 --AGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTAT 50364 | || | ||| ||||||||||||| |||||||| | | | || |||||||| Sbjct 38602 TTATGTCAAAAGTTAAGTCTACTTCTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTAT 38661 Query 50365 ACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATA 50407 | | | |||| || || || || ||||||| ||||| Sbjct 38662 AAAAATCCCATATTTCTTGATATTGTATTGGAAATAAAACATA 38704 >seq34 Length=123199 Score = 132 bits (146), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||| |||||||||| | | || |||| ||||| || ||||| || | ||| Sbjct 109631 GATATTATAATCTGATAATGTTCTTCCGTCTTCCAGCTGTTTTCCTGCAAAAATAAGTCT 109690 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || ||||| || ||||||||||| ||||| || || ||| ||||| || Sbjct 109691 CTGCTGCTCAGGAGGAATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTTTCAATGCT 109750 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || |||||| || | |||||| || |||||||| | ||| || | ||||||||| Sbjct 109751 ATCCGAGCTTTCTACCTCCAAAGTAATTGTCTTACCAGTCAGTGTCTTTACAAATATCTG 109810 Query 192534 CAT 192536 ||| Sbjct 109811 CAT 109813 >seq32 Length=103007 Score = 132 bits (146), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||| |||||||||| | | || |||| ||||| || ||||| || | ||| Sbjct 13570 GATATTATAATCTGATAATGTTCTTCCGTCTTCCAGCTGTTTTCCTGCAAAAATAAGTCT 13511 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || ||||| || ||||||||||| ||||| || || ||| ||||| || Sbjct 13510 CTGCTGCTCAGGAGGAATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTTTCAATGCT 13451 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || |||||| || | |||||| || |||||||| | ||| || | ||||||||| Sbjct 13450 ATCCGAGCTTTCTACCTCCAAAGTAATTGTCTTACCAGTCAGTGTCTTTACAAATATCTG 13391 Query 192534 CAT 192536 ||| Sbjct 13390 CAT 13388 Score = 132 bits (146), Expect = 9e-26 Identities = 139/183 (76%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||||||||| |||||||||| | | || |||| ||||| || ||||| || | ||| Sbjct 23170 GATATTATAATCTGATAATGTTCTTCCGTCTTCCAGCTGTTTTCCTGCAAAAATAAGTCT 23229 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || ||||| || ||||||||||| ||||| || || ||| ||||| || Sbjct 23230 CTGCTGCTCAGGAGGAATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTTTCAATGCT 23289 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || |||||| || | |||||| || |||||||| | ||| || | ||||||||| Sbjct 23290 ATCCGAGCTTTCTACCTCCAAAGTAATTGTCTTACCAGTCAGTGTCTTTACAAATATCTG 23349 Query 192534 CAT 192536 ||| Sbjct 23350 CAT 23352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479217953700