Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq36 264 2e-65 seq34 134 2e-26 seq32 134 2e-26 >seq36 Length=80385 Score = 264 bits (292), Expect = 2e-65 Identities = 582/871 (67%), Gaps = 30/871 (3%) Strand=Plus/Plus Query 38848 CttttttttCGAAAAAGTTTGTTTTTCCTTCTAA--TGATATTAAATTCATAAAATCAAA 38905 ||||||| || || || ||||||||||| || || | | || | |||||||||||| Sbjct 37855 CTTTTTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTT--TCCATAAAATCAAA 37912 Query 38906 TGGATTTTTGGTATTATAATATTTTTCTCCTATC--AATACATATAATAATCTATCGGCC 38963 ||||||||| ||||| || || |||| | || || ||| ||||||| | |||||| ||| Sbjct 37913 TGGATTTTTCGTATTGTA-TACTTTT-TGCTCTCCTAATGCATATAACAGTCTATCTGCC 37970 Query 38964 ACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAATGGTAAT 39023 |||||||| | || ||| ||| | | ||||||||| || | || ||| ||||||| Sbjct 37971 ACAAATTCTATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAAT 38030 Query 39024 GCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattatcataattatatt 39082 || || |||| ||| |||||||||||||| || |||| ||| ||| | || | Sbjct 38031 GCGTCTGTCAA-AAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCTTTAATGCT 38089 Query 39083 attttttgataatttatatttaatatgattcgcatataGTAAACATGCAAAATCCGTATG 39142 |||| | |||| | |||| | || | || | |||||||||||| ||||| Sbjct 38090 ----TTTGC--ACTTATTTCTAATGTACTTG---TGTAAAAGACATGCAAAATCTGTATG 38140 Query 39143 TAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCT 39202 | ||| |||||||| || |||| |||||| ||| |||| ||||||||| |||||||| Sbjct 38141 AAGACCCTCGTCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCT 38200 Query 39203 CTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGC 39262 |||||| |||||||| |||| |||||| || | || || || || || |||||||| Sbjct 38201 CTTTTTGAGCCAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGC 38260 Query 39263 AAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCA 39322 |||||| | ||| | |||| | |||| || |||||| ||| ||||| Sbjct 38261 AAATGCCACGCATCTCGTGTCAAA---AGAAGTATCGCTTACAATCCACTTTTGTGCCCA 38317 Query 39323 ATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAATTCATNNNNNNN 39382 ||||||||||| || || | ||||| |||||||| || ||||| | | || Sbjct 38318 TTCTGCTTTTTTCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTC 38377 Query 39383 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAGAATGTACAGCTTC 39442 ||||||||||| ||||||| ||| Sbjct 38378 TTTATAATCTGGTACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTC 38437 Query 39443 CATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAACTTCGGAAAAGAA 39502 || || |||||||| ||||| | ||||||| || ||| || | || Sbjct 38438 TATTGCAATTTGAAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAA 38497 Query 39503 TCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACATA 39562 || ||| |||||| ||| |||||| ||||| ||||| || || ||||| | ||| Sbjct 38498 TCTTTCTGATAAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCT 38557 Query 39563 TTTAATAAAATGTTTTTCATTATCTTTTAAATT--TTCCCAAGATTCA--AGATCGTTTG 39618 ||| |||||| || || || | | || | || || || || || | || | Sbjct 38558 TTTTATAAAAAATTGCTCGTT-TTTGTTGAGTTGATT---AAAATGCATTATGTCAAAAG 38613 Query 39619 ATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACATTTGATATA 39678 ||| ||||||||||||| |||||||||| | | || ||||||||| | | ||| Sbjct 38614 TTAAGTCTACTTCTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATA 38673 Query 39679 TATCAAAATGTTCAATGGGAAATAACACATA 39709 | || || || || |||||||| ||||| Sbjct 38674 TTTCTTGATATTGTATTGGAAATAAAACATA 38704 >seq34 Length=123199 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||||||||| | || | |||| |||| ||||| || |||||||| | |||| Sbjct 109632 ATATTATAATCTGATAATGTTCTTCCGTCTTCCAGCTGTTTTCCTGCAAAAATAAGTCTC 109691 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| || ||||||||||| ||||| || || ||| ||||| || || Sbjct 109692 TGCTGCTCAGGAGGAATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTTTCAATGCTA 109751 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || |||||| || | |||||| || |||||||| | ||| || | ||||||||| Sbjct 109752 TCCGAGCTTTCTACCTCCAAAGTAATTGTCTTACCAGTCAGTGTCTTTACAAATATCTGC 109811 Query 172068 AT 172069 || Sbjct 109812 AT 109813 >seq32 Length=103007 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||||||||| | || | |||| |||| ||||| || |||||||| | |||| Sbjct 13569 ATATTATAATCTGATAATGTTCTTCCGTCTTCCAGCTGTTTTCCTGCAAAAATAAGTCTC 13510 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| || ||||||||||| ||||| || || ||| ||||| || || Sbjct 13509 TGCTGCTCAGGAGGAATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTTTCAATGCTA 13450 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || |||||| || | |||||| || |||||||| | ||| || | ||||||||| Sbjct 13449 TCCGAGCTTTCTACCTCCAAAGTAATTGTCTTACCAGTCAGTGTCTTTACAAATATCTGC 13390 Query 172068 AT 172069 || Sbjct 13389 AT 13388 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||||||||||||||| | || | |||| |||| ||||| || |||||||| | |||| Sbjct 23171 ATATTATAATCTGATAATGTTCTTCCGTCTTCCAGCTGTTTTCCTGCAAAAATAAGTCTC 23230 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || ||||| || ||||||||||| ||||| || || ||| ||||| || || Sbjct 23231 TGCTGCTCAGGAGGAATTCCTTCTTTGTCTTGAATCTTTGCTTTGACATTTTCAATGCTA 23290 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || |||||| || | |||||| || |||||||| | ||| || | ||||||||| Sbjct 23291 TCCGAGCTTTCTACCTCCAAAGTAATTGTCTTACCAGTCAGTGTCTTTACAAATATCTGC 23350 Query 172068 AT 172069 || Sbjct 23351 AT 23352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135298519600