Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq35 91.5 1e-12 seq23 91.5 1e-12 seq36 89.7 4e-12 >seq35 Length=128636 Score = 91.5 bits (100), Expect = 1e-12 Identities = 226/337 (67%), Gaps = 6/337 (2%) Strand=Plus/Minus Query 400273 GCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAA 400332 |||||||| ||| | | | |||| || || ||||||||||| || ||||| || ||| Sbjct 44598 GCAGGAACAAAAAAGAGTTCCGAATGCACACTTATTTTGACAGAAGGTGATTCTGCAAAA 44539 Query 400333 ACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTT 400392 ||||| || | | || | | || |||| ||||| | ||||| || || ||| | Sbjct 44538 ACATTGGCAGTTGCAGGTTTAAGCGTCGTTGGTAGAGACAAGTATGGTGTGTTTCCATTA 44479 Query 400393 AGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaaa--aaaTTGCCGATAATGAGG 400450 | || || || | ||||| ||||| || || | | || |||| || |||| | Sbjct 44478 CGTGGTAAGCTGCTAAATGTGAGGGAAGC-AG-CAAACAAGCAAATAATGGAGAATGCAG 44421 Query 400451 AAATTACAGCAATCaaaaaaaTTGTTGGACTTGAACAAGGAAAAGTTTATGATGA-TCTC 400509 |||| | ||||| |||||||| | ||||| |||| || ||| ||| || || Sbjct 44420 AAATAAGCGCAATTAAAAAAATATTAGGACTGCAACATGGCAAAACATATTCAGACACTT 44361 Query 400510 AAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAAGATGTTGATGGGTACCAT 400569 | ||| ||||||| || ||||| | | ||||| ||| ||||||| | || Sbjct 44360 CCACTCTTA-GATATGGGCACATAATGATAATGACAGATCAGGATTTTGATGGTTCTCAC 44302 Query 400570 ATCAAAGGATTAATCATGAATTTTATCCATTGTTTTT 400606 || |||||||| || || |||||| | || ||||| Sbjct 44301 ATTAAAGGATTGATAATTAATTTTTTAGATCATTTTT 44265 >seq23 Length=240858 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| || | || || || |||||||| || |||| || | ||||| | || || Sbjct 168307 CCATATGCTAGTGCTGCTGCCGTTGGTTCGTTTATAACCCTAACAACATCTATGCCCGCT 168248 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||||||||| |||||| | ||||||||||||||||||||||| |||||||| ||| Sbjct 168247 TGCTTTCCTGCATTTTTAGTTTCCTGTCTTTGTGAATCGTTAAAATACGCAGGAACTGTA 168188 Query 282464 ATAACGGC 282471 || || || Sbjct 168187 ATTACCGC 168180 >seq36 Length=80385 Score = 89.7 bits (98), Expect = 4e-12 Identities = 265/400 (66%), Gaps = 14/400 (4%) Strand=Plus/Plus Query 161308 AATAAATTGATTTGATATAATTAGACCAGGCATTACATGCATTTCTCTAGTTTTTAACCA 161367 ||||| || |||||| | |||| || ||||| | || | ||||| |||| | ||| Sbjct 38159 AATAAGTTCATTTGAAAATGTTAGTCCTGGCATCA-ATCC---TCTCT--TTTTGAGCCA 38212 Query 161368 GAAAATCGAAGCAAATGATCCACTAAAGAAAACGCCTTCTACAATAGAGAATGCTACTAA 161427 ||||| | |||||| || ||||| || |||| ||||||||| | ||||| || | Sbjct 38213 AAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGCCACGCA 38272 Query 161428 TTT-GTGAGCATATGTCTTATCAGATTTAATCCATTTATTACACCAATCAGCTTTCTTTT 161486 | | ||| || | | |||| | |||||| || | ||| || ||||| || | Sbjct 38273 TCTCGTGT-CAAAAGAAGTATCGCTTACAATCCACTTTTGTGCCCATTCTGCTTTTTTCT 38331 Query 161487 TAATACTTGGCATAGTTTTAATAGAATTAATGAGTTTATTTCTCAAAGCATCATCTTTAA 161546 |||| ||| || ||| || | ||||| || | |||| | || |||| | Sbjct 38332 TAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTATAATCTGGTA 38391 Query 161547 CAAATGTAGTCAACATTAGTGAATACATTTCTCCATGAGCATTTTCCATTGCATATTGGA 161606 | ||||| | || | ||||||||||||| ||| ||||| |||||| ||| | Sbjct 38392 CCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTATTGCAATTTGAA 38451 Query 161607 AACCATAAGCACATTCAGCTTCTTTTATTTTCACAACATCAAT--AAGAT-TTTCTTTAA 161663 | || ||| ||| | ||||| || | ||||||| | || || ||||| | Sbjct 38452 AGCCGTAAAAACACTTTGCTTCCAAAATGGT---AACATCATTTGAAAATCTTTCTGATA 38508 Query 161664 TATTAGCATTAACAATACCATCAGCTGCCGCAAAAAATGC 161703 ||| |||| ||||| ||||| | ||| ||||||||||| Sbjct 38509 AATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGC 38548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740627356062012