Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq29 105 7e-18 >seq29 Length=110338 Score = 105 bits (116), Expect = 7e-18 Identities = 237/352 (67%), Gaps = 7/352 (2%) Strand=Plus/Plus Query 106766 AAAGGAATAGATCAACTACGAGAAGTTGTGGAACAACTTAAGACAAATCCATCCAGTCGT 106825 || ||||| ||||| || | || ||| | || ||| |||||||||||||| |||| | Sbjct 17458 AAGGGAATTGATCAGCTTAGGGATGTTATTGAGCAAATTAAGACAAATCCAACCAGCAGA 17517 Query 106826 AGAATGATTATTTGTTCTTGGAATGTAGCTCAGCTGAATCAAATGGCGCTTCCACCTTGT 106885 ||| ||||| | ||| | |||||| ||||| || ||||||| |||||||| ||| Sbjct 17518 AGACTGATTGTGTGTGCGTGGAATCCTTTACAGCTTAAGGAAATGGCACTTCCACCGTGT 17577 Query 106886 CATTGTCTTGTCCAATTCTATGTGCGCAACAATACCCATCTAGATTGCCAGTTGTACCAA 106945 ||| | | | || || | ||| | || | | || ||| |||||||| Sbjct 17578 CATACTTTATTTCACTTTAAGGTG---TATGGTAACAAGTTAAGCTGCATTCTGTACCAA 17634 Query 106946 AGATCCGCCGATATTGGGCTCGGAGTCCCGTTCAACATCGCCAGCTACTCATTTCTAATG 107005 ||||| | ||| |||| | || || || || ||||| || || || | || || | | Sbjct 17635 AGATCAGGTGATGTTGGTTTGGGTGTTCCTTTTAACATTGCAAGTTATGCTTTGCTTACG 17694 Query 107006 TACGTTTTGGCAAAATGGACAAATCT-GACCCCAG-GACGTTTTATCCATACGTTTGGAG 107063 || ||||||||| |||||||| || || || || ||||| ||| | |||| Sbjct 17695 ATAATTGTGGCAAAATTAACAAATCTAGAACCTAGTGA--ATTTATTCATTTTATAGGAG 17752 Query 107064 ACGTGCATGTGTACTCGACTCATGTTGAAGCTTTGAGGGAGCAAATTGCCAG 107115 || ||| || ||| | ||| |||||| | |||| |||||| | | ||| Sbjct 17753 ACACGCACGTTTACAAGGATCACGTTGAACCATTGAAAGAGCAACTGGACAG 17804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521545195802160