Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq36 327 2e-84 >seq36 Length=80385 Score = 327 bits (362), Expect = 2e-84 Identities = 611/890 (69%), Gaps = 13/890 (1%) Strand=Plus/Plus Query 39346 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||| || || ||||| ||||| || ||||| | |||||||| |||||||| ||||| Sbjct 37859 TTTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATGGATT 37918 Query 39406 AGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTC 39465 | | ||| ||| ||||| ||||||| | | | || ||||||||| |||||||| Sbjct 37919 TTTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAACAGTCTATCTGCCACAAATTC 37978 Query 39466 TATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGT 39525 |||||| | ||| | | |||||||||||| || | ||||||||| || || || Sbjct 37979 TATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGTCTGT 38038 Query 39526 TAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACT 39585 | |||||||||||| || || || || || | | ||| | | ||| | | | |||| Sbjct 38039 CAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCT-TTAATGCTTTTGCACT 38097 Query 39586 CGGTGG--ATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCA 39643 | ||| | | ||| |||| | || || || || ||| || ||||| Sbjct 38098 TATTTCTAATGTACT---TGTGTAAA----AGACATGCAAAATCTGTATGAAGACCCTCG 38150 Query 39644 TCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGC 39703 || || ||| | ||| || |||||||| ||||| ||||| | || | |||||||||| Sbjct 38151 TCCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTTGAGC 38210 Query 39704 CAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACA 39763 ||||| || ||||||||||| ||| || || || |||||||| |||||||| || Sbjct 38211 CAAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGCCACG 38270 Query 39764 AGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTC 39823 |||| | || ||||| | |||||||| |||||||| || ||||| ||| Sbjct 38271 CATCTCGTGTCAAAAGAAGTATCGCTTACAATCCACTTTTGTGCCCATTCTGCTTTTTTC 38330 Query 39824 TTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTA 39883 || | || || ||||||| |||||||| ||||||| || || | | |||| Sbjct 38331 TTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTATAATCTGGT 38390 Query 39884 ACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGA 39943 || |||| ||||| || ||||||||||||||| |||||||| || || || ||| Sbjct 38391 ACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTATTGCAATTTGA 38450 Query 39944 AATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAA 40003 || ||||||||||| ||||||| ||| || || |||||||||| | ||| Sbjct 38451 AAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAATCTTTCTGATAAA 38510 Query 40004 TTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATAT 40063 |||||||| || |||||||| || ||||||||||| | || ||| |||||| || Sbjct 38511 TTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTTTTTATAAAAAAT 38570 Query 40064 TTTTCATCGGGTGTCAATTTATTCCAGT-CATTGATATCTTTTGATATATCTACTTCTTC 40122 | || | | | || ||| | | |||| || || | || ||||||||||| Sbjct 38571 TGCTCGTTTTTGTTGAGTTGATTAAAATGCATT-ATGTCAAAAGTTAAGTCTACTTCTTC 38629 Query 40123 AGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTAT 40182 | |||||||| | | || ||||| || | | |||||| || |||||||||| Sbjct 38630 TACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTTCTTGATATTGTAT 38689 Query 40183 TGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATGGGTTCCATAA 40232 |||||| | |||| | || || |||| | |||| | |||| ||||| Sbjct 38690 TGGAAATAAAACATACCTCTTGTGATTCTGGTCAAGAAGTGGTT-CATAA 38738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908267645680