Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq18 405 1e-108 >seq18 Length=4217 Score = 405 bits (448), Expect = 1e-108 Identities = 664/951 (70%), Gaps = 11/951 (1%) Strand=Plus/Plus Query 19766 TTCAAAATATACTTAGGTCTTGATTTTGTTTCTAAGTAAATTCTACCTATATATTCACCG 19825 || |||||||| | |||| | || ||||| | || || ||||| |||||||| || Sbjct 1873 TTTAAAATATATCTTGGTCGTTTCTTAGTTTCCATATAGATCCTACCAATATATTCCCCT 1932 Query 19826 AGAACACCAATCCCGATCAGTTGCACTCCACCCAAGAAAAGTATTGATACAAGCAGGGAG 19885 | ||| || || || || ||||| || ||||| || || || ||||| || | | || Sbjct 1933 AAAACGCCTATTCCTATAAGTTGTACACCACCTAAAAATAGGATTGAAACTAATAATGAC 1992 Query 19886 GGATACCCGCGTACTGGGTTACCAAAGACAAGGGTGTCTATAATCATCCATGCACCATAT 19945 ||||| || ||| || || | | || || |||| ||||| ||| | ||||||| Sbjct 1993 GGATATCCTTTTACATCATTTCCCCAAATAATAGTTTCTAAAATCAACCAAGAACCATAT 2052 Query 19946 AAAAATGAAATGCTTGCAACAAACAAGCCTATATAAGTCCATACGCGAAGAGGAAAGGTT 20005 ||||| || | | |||||| || | || | ||| ||||| | | | ||| | ||| Sbjct 2053 AAAAAAGATAAGGTTGCAATTAAAAGTCCAACATATGTCCAAATTCTCAAAGGTATCGTT 2112 Query 20006 GAAAAACTTGTGATACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTGAG 20065 ||||||||||| | ||||| | ||| |||||||| | ||||| |||||||| || | Sbjct 2113 GAAAAACTTGTAACCCCTTCTAATGCAAGATTCCAAAGCTTCCACCCATTAAACTTGGTT 2172 Query 20066 ATGCCAGCAACACGCTCTGCGCGTACATATTCAACGACATCCGTCTGACCACCCACCCAG 20125 |||||| | | || ||||||||||| ||||| ||| ||||| ||||| Sbjct 2173 TGACCAGCACTTCTTGTAGGACGAACATATTCAACAACATCGATCTTTCCACCAACCCAA 2232 Query 20126 CTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTTAATGTTCTCCACAACC 20185 |||| |||||||| ||||| || ||||| | ||||| || || |||| | Sbjct 2233 GAAAGTACTCCTTTCATAAAAAGGTTTATTTCAGGTAGTCTCTTAATATTTTCTACAATC 2292 Query 20186 TCACGAGACATGAGTCGAAAATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTG 20245 || | |||||| | ||||||||| || |||||||| || || || || | ||| || ||| Sbjct 2293 TCTCTAGACATTAATCGAAAATCACCAACATTTTCTTCAATTTTAGGTGAGCTAATCTTG 2352 Query 20246 TTGTGTAATTTATAGAACCACTCAGCTG----TCTTACGTTTCAGTCGTCCATCAGTTGA 20301 || |||||| ||| || | ||| | |||| ||| | | | | |||||| Sbjct 2353 TTATGTAATCGATAAAATGCCAAAGCCGTTGATCTT---TTTAAATAG-CTATCAGTACT 2408 Query 20302 GCGGTCTGAACGTTTAGCAAGCACCATGTCAGCACCTGCCTGCCACTTTTCAATAAGATG 20361 | ||| |||||||| | ||||| ||||| || |||||||||||| |||| || | Sbjct 2409 TCTGTCACTTCGTTTAGCTAAAACCATATCAGCTCCAGCCTGCCACTTTGCAATCAGTAG 2468 Query 20362 AGGGATAACCTCAATTGGGTCTTGCAGGTCGACATCAATAGGAATTACAGCATCGCCGCT 20421 || ||||||||||| ||||| || ||||| |||||||| ||||| |||||||| || | Sbjct 2469 CGGAATAACCTCAATGGGGTCCTGAAGGTCAACATCAATTGGAATAACAGCATCACCAGT 2528 Query 20422 TGCATGGTCTAACCCTGCAAATAAGGCTGGTTCTTTACCAAAGTTGCGTGTAAATGACAG 20481 |||||| |||| |||||||||||| || || |||||||||||||| | ||||| | Sbjct 2529 TGCATGCTCTATCCCTGCAAATAAAGCAGGCTCTTTACCAAAGTTTCTAGTAAAACTTAA 2588 Query 20482 CGGAACAACTAGCGGGTCTGAAACAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTTT 20541 | ||| | | |||| || | || ||||||||||| | ||||| ||||| Sbjct 2589 TGCTCTAACAAACTTATCTGTAAGTGATAGTTCGTTAATAATTAATTCTGTTTTGTCTTT 2648 Query 20542 ACTTCCGTCATTTATGAATACAATTTCTACTTCATATGGCTTCAACTCTTGGA-ATTCAC 20600 ||| || ||||| ||||| | || || || |||||| ||| || | | | | | Sbjct 2649 ACTACCATCATTAATGAAAATGATCTCCACATCATATTTCTT-AAGGGGAGCATAATTTC 2707 Query 20601 GTACCGTTTTATAGAAAACAGGTATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAG 20660 || | | ||| |||| ||| || |||||||||||||| || |||||||| | |||| Sbjct 2708 TAACAGCGTCATAAAAAATAGGGATAGCTTCTTCTTCATTAAAAACAGGAACAATTAGAG 2767 Query 20661 ATATTTTCATTTCGCATCCCTAAAGACAATGAACTTTGAATAGACGAAACC 20711 ||||||||| | | | |||||| || | | |||||||| | ||||| Sbjct 2768 ATATTTTCA-TACTACTTCCTAAACACTAAATATTTTGAATATAAAAAACC 2817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122723109645044