Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq34 131 2e-25 seq32 131 2e-25 seq36 86.0 7e-12 >seq34 Length=123199 Score = 131 bits (144), Expect = 2e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || ||||| |||||| | ||||| || || | Sbjct 109813 ATGCAGATATTTGTAAAGACACTGACTGGTAAGACAATTACTTTGGAGGTAGAA--AGCT 109756 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||||||||| |||| | || || || ||||| ||||| || ||||||||||| || | Sbjct 109755 CGGATAGCATTGAAAATGTCAAAGCAAAGATTCAAGACAAAGAAGGAATTCCTCCTGAGC 109696 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || |||||||| || || || || || || | | || || |||| |||| Sbjct 109695 AGCAGAGACTTATTTTTGCAGGAAAACAGCTGGAAGACGGAAGAACATTATCAGATTATA 109636 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 || |||| |||||| ||| || || | || ||| | || | || ||| || Sbjct 109635 ATATCCAGAAGGAAAGCACACTGCACTTGGTTTTGAGACTGAGAGGAGGAAAA 109583 >seq32 Length=103007 Score = 131 bits (144), Expect = 2e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || ||||| |||||| | ||||| || || | Sbjct 13388 ATGCAGATATTTGTAAAGACACTGACTGGTAAGACAATTACTTTGGAGGTAGAA--AGCT 13445 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||||||||| |||| | || || || ||||| ||||| || ||||||||||| || | Sbjct 13446 CGGATAGCATTGAAAATGTCAAAGCAAAGATTCAAGACAAAGAAGGAATTCCTCCTGAGC 13505 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || |||||||| || || || || || || | | || || |||| |||| Sbjct 13506 AGCAGAGACTTATTTTTGCAGGAAAACAGCTGGAAGACGGAAGAACATTATCAGATTATA 13565 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 || |||| |||||| ||| || || | || ||| | || | || ||| || Sbjct 13566 ATATCCAGAAGGAAAGCACACTGCACTTGGTTTTGAGACTGAGAGGAGGAAAA 13618 Score = 131 bits (144), Expect = 2e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| || || || ||||| |||||| | ||||| || || | Sbjct 23352 ATGCAGATATTTGTAAAGACACTGACTGGTAAGACAATTACTTTGGAGGTAGAA--AGCT 23295 Query 27466 --GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||||||||| |||| | || || || ||||| ||||| || ||||||||||| || | Sbjct 23294 CGGATAGCATTGAAAATGTCAAAGCAAAGATTCAAGACAAAGAAGGAATTCCTCCTGAGC 23235 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 ||||| | || |||||||| || || || || || || | | || || |||| |||| Sbjct 23234 AGCAGAGACTTATTTTTGCAGGAAAACAGCTGGAAGACGGAAGAACATTATCAGATTATA 23175 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 || |||| |||||| ||| || || | || ||| | || | || ||| || Sbjct 23174 ATATCCAGAAGGAAAGCACACTGCACTTGGTTTTGAGACTGAGAGGAGGAAAA 23122 >seq36 Length=80385 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785 || ||||| ||||| ||||||||||| || ||| || || | | ||||| ||||| Sbjct 38266 GCATTTGCGTGTGTAGAAGGAATTTTTTTCAGTGGTTCTTTTGCTGCAATTTTTTGGCTC 38207 Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845 |||||| | || |||||||||| || | ||||| || || || || || |||||||| Sbjct 38206 AAAAAGAGAGGATTGATGCCAGGACTAACATTTTCAAATGAACTTATTTCCAGGGACGAG 38147 Query 64846 GGGCTCCACCAAGAATTTGC 64865 || || || ||| ||||| Sbjct 38146 GGTCTTCATACAGATTTTGC 38127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309958009440