Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Enterocytozoon_20hepatopenaei_20[genbank_20GCA_5F002081675.1_202017- 04-06] 62 sequences; 3,253,521 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq36 268 8e-67 >seq36 Length=80385 Score = 268 bits (296), Expect = 8e-67 Identities = 598/890 (67%), Gaps = 21/890 (2%) Strand=Plus/Plus Query 4278 TTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTA 4337 || || |||||||| ||||| || || || | ||||||||||||||||| ||||| Sbjct 37860 TTATCAAAGAAATTTGTTTTTCCCTCCAAACTCAAGTTTTCCATAAAATCAAATGGATTT 37919 Query 4338 GTTGCGTTGTAATGTTTTT-CACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396 | | ||||| ||||| | | | | | || || || || || || |||||||| Sbjct 37920 TTCGTATTGTATACTTTTTGCTCTCCTAATGCATATAA-CAGTCTATCTGCCACAAATTC 37978 Query 4397 TATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGT 4456 ||| ||||| | ||| || | || || |||||||| || || || |||| |||| ||| Sbjct 37979 TATGTACTGTCCCATAAGGTTACAATTCATTCCAATCAAACTAACTGGTAATGCGTCTGT 38038 Query 4457 CAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGA 4516 ||||||||||| |||||| || ||||| | | ||| |||| || |||| | Sbjct 38039 CAAAAACTCTTTTTCTATTTCCACTGCTTCCATAACTATGGCTTTAAT----GCTTTTG- 38093 Query 4517 TGGTTTATTTACTAA-GTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGT 4575 |||||| |||| ||| || | ||| |||||||| ||| | ||| |||| Sbjct 38094 -CACTTATTT-CTAATGTACTTGTGTAAAAGACATGCAAAATCTGTATGAAGACCCTCGT 38151 Query 4576 CTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCC 4635 | ||| ||| ||||| || ||||| |||| ||| ||||| || ||||||||||| |||| Sbjct 38152 CCCTGGAAATAAGTTCATTTGAAAATGTTAGTCCTGGCATCAATCCTCTCTTTTTGAGCC 38211 Query 4636 AAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTA 4695 |||| || || ||||| || ||| || || || |||||||| ||||| || || Sbjct 38212 AAAAAATTGCAGCAAAAGAACCACTGAAAAAAATTCCTTCTACACACGCAAATGCCACGC 38271 Query 4696 ATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTT 4755 ||| | | || || | | | | |||||| ||| |||||| | ||||||| Sbjct 38272 ATCTCGTGTCAAAAGA---AGTATCGCTTACAATCCACTTTTGTGCCCATTCTGCTTTTT 38328 Query 4756 TCTTAACGCACGGAATTGTGTATATAGCGTTAA----ATAATTTACTTTTTTCAAATGGG 4811 |||||| || || | | ||| || |||| ||||||| | ||| || Sbjct 38329 TCTTAATTGCTGGTATGTTTTCTATTGCATTAAAAAGATAATTTTGCTCTTTATAA---- 38384 Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 ||| | | | || ||||| | | ||||||||| |||||||| |||||||| ||| Sbjct 38385 TCTGGTACCAATGTTTCTATCAATTTTGAATACATTTCTGAATGTATGTTTTCTATTGCA 38444 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || ||||| |||||||| || | ||||| | ||| || || ||||||||||| Sbjct 38445 ATTTGAAAGCCGTAAAAACACTTTGCTTCCAAAATGGTAACATCATTTGAAAATCTTTCT 38504 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 ||| ||||| ||||| || || || || |||||||| || | ||| |||| Sbjct 38505 GATAAATTTTCATTTACAATTCCATCTGATGCAGCAAAAAATGCAAGAACTCTTTTTATA 38564 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACT 5051 || | || |||| || |||| || | || | || |||||| || ||| Sbjct 38565 AAAAATTGCTCGTTTTTGTTGAGTTGATTAAAATGCATTATGTCAAAAGTTAAGTCTACT 38624 Query 5052 TCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATAC 5111 ||||| ||||||||||| | | ||| |||||| || | | ||| || || |||| Sbjct 38625 TCTTCTACAGTCCAAAAAGTAGATTCGTGTTTTTTATAAAAATCCCATATTTCTTGATAT 38684 Query 5112 TGAATCGGAAGTATGACAAATCTGTTGTCGTTAGGTGTAAGAAGCGGTTC 5161 || || |||| || ||| | || |||| || | |||||| ||||| Sbjct 38685 TGTATTGGAAATAAAACATACCTCTTGTGATTCTGGTCAAGAAGTGGTTC 38734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049277310646