Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1858 141 1e-28 seq1918 89.7 6e-13 >seq1858 Length=2805 Score = 141 bits (156), Expect = 1e-28 Identities = 549/850 (65%), Gaps = 26/850 (3%) Strand=Plus/Minus Query 23864 TTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGGATGGATT 23923 ||| || || |||||||||||||||| ||||| || || ||||| |||| | |||| || Sbjct 1573 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 1514 Query 23924 GGTAACATTATAGATTCTTTTAAAT--CCCAATTCAGAAATCAATCTATCTGCGACAAAC 23981 | | || || || ||| | | || |||||| ||| |||||||| || | ||| Sbjct 1513 TGGAGTGTTGTAAAT--TTTAGACTCACCTAATTCATAAAGTAATCTATCAGCAATAAAT 1456 Query 23982 TCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACA 24041 || || || |||| || | |||||| || || | ||| || || | |||| || Sbjct 1455 TCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCA 1396 Query 24042 GTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCA 24101 | || |||||||| ||| || || || || | |||| | ||| ||| Sbjct 1395 GCAAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATATCT-TTAATGT------- 1344 Query 24102 CTCGGTGGATACAAT---AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCC 24158 ||||| | | | |||| | | |||||| || ||||| || | ||| Sbjct 1343 -ACGGTGATTTCTCTCTGAAATACTCGTGAAGCAAACAAGCAAAATCAGTATGCAAACCT 1285 Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || ||| | ||| || ||||| || || | || | | || | ||||| Sbjct 1284 TCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGAAGAATACCTCTTTTTTTC 1225 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 | ||||||||| | ||||| ||||| |||||||| || ||||| || ||||| ||| Sbjct 1224 AACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACAAGCAAATGCA 1165 Query 24279 ATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTC 24338 || | ||| || ||| | | ||| ||||| || |||||||||| ||||| Sbjct 1164 ATCATTCTAGTATCAAAACTCTCATTTGAATGAATCCATTTAAGAGCCCAATCAGCCTTT 1105 Query 24339 TTTTTTACACAAGG-CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATC 24397 || || | | |||| | ||| || ||| | ||||| | | | | ||| | ||| Sbjct 1104 TTCTTAATAGAAGGATAATGT-TCAATACCGTTAAATAAAATATCCCTCTCACGATCATC 1046 Query 24398 TTTAACATATGTATCAATCAA--AAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || | | || || ||||| ||| ||| | || ||||| |||||||| | Sbjct 1045 CTTGATAAGAGTTTCTATCAACTTAGAGTAT--GTCTCATTATGAACATTTTCAATAGAA 988 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 ||| || | || || | | | || || || | ||| || ||| |||||| Sbjct 987 CATTGTAAACTATAAAATGACTTCACTTCTAACATGTGAATTTCATTAGTAAAACGTTCT 928 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 |||||||| ||| || || || || |||||||| || || | ||| ||| || Sbjct 927 AATAAATTTTGATTAACAATACCATCTGAAGCTGCAAAGAAAGCTAGCACAGTTTTAATG 868 Query 24576 AAATATTTTTCGT-CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634 ||| | || || | || || ||| | | ||||||| |||||||| | || | Sbjct 867 AAAAACTTCTCATCCTCGT-TTAAAGTTTCAAAATCATTAGCATCTTTAGTAAAGTCAAT 809 Query 24635 TTCTTCCACTGTCCAAAATGA-TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 24693 |||||| || |||| |||||| || ||||||||||||||| ||| || || || Sbjct 808 TTCTTCAACAGTCC-AAATGACAGCAGATGCCTTTTTATACATCCCCCAAATCTCTGGAA 750 Query 24694 ATTGAATTGG 24703 |||||||||| Sbjct 749 ATTGAATTGG 740 >seq1918 Length=2592 Score = 89.7 bits (98), Expect = 6e-13 Identities = 301/460 (65%), Gaps = 23/460 (5%) Strand=Plus/Plus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 |||||| || |||||||| || || | | || |||| | ||||| || || |||| || Sbjct 385 AGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCACA 444 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC----TCTTTTTGTTACACG 53825 | |||| || || || ||||| | ||| | ||||||| ||| || | || | Sbjct 445 CAAATTAGAACTTTTAATTGTTCCAAGATTCTTTTGATTAGATAATCTATTGG---CA-G 500 Query 53826 CATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCC 53885 |||||||||||| ||| | || ||||||||||| || || | | ||| || ||| ||| Sbjct 501 TATCCTTATAAAGCATGTAAGGAGTACCAGTTTCTATTTGTGCTGTTATTATTGCTCTCC 560 Query 53886 AGACGACACGAGCCTTTATTATAGATTTGTA---TCTCTTTTCTCTTTCGTATAGTG--T 53940 | | | || || || | | ||| || | | ||||||| |||||| Sbjct 561 AAAGATTTCTAG-CTCTAACA-ACCTTTCTAGACTTTGTTTTCTC------ATAGTGATG 612 Query 53941 ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-C 53999 ||| ||| || ||| || | || || | | ||||| | ||| ||| | Sbjct 613 ATATAATGATTTAAATTCATTACCATGCACTTCATGTAATCCCTTAGCAACATTAGGATC 672 Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059 | || ||| ||| || | || | | |||| || |||||| | |||||| ||||||| Sbjct 673 AAATAAAC-TCCATTCATCATCTTTTTCAACTCTTTCCATAAATAAATCAGGTATCCAAA 731 Query 54060 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119 |||||| ||| | ||||| | | ||||| | || |||||||| | | ||| | Sbjct 732 GAGCTAAAAACATTTCTCTAGCACGCATATCCTCATCACCAGTATTCTTCCTTAAATCTA 791 Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 54159 || | | |||||| |||||| ||||||||||| || Sbjct 792 AAAATTCAAAAATATCTTTATGCCATGGTTCCAAGTAAAT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593704203957120