Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq90 143 4e-29 seq1869 141 1e-28 seq570 107 3e-18 seq248 96.9 5e-15 >seq90 Length=6869 Score = 143 bits (158), Expect = 4e-29 Identities = 294/434 (68%), Gaps = 11/434 (3%) Strand=Plus/Plus Query 202791 TCATATATCTAATTTTACCAAATATTGGTCTTTCTTTCCATGCTCTATC-ATGAATACCA 202849 |||| |||| ||||| ||||| | | | ||||||| | |||||||| || | |||| Sbjct 3227 TCATTGATCTTATTTTCCCAAAGAATTCTTTTTCTTTAAAAGCTCTATCCATTGA-ACCA 3285 Query 202850 CAAATTGACCACATACATCCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTA 202909 ||||| ||||||| ||| ||||||||| |||||| |||||| || ||| | | Sbjct 3286 CAAATACTCCACATAATTCCTGTATATCCATTAGGATCATTTCCATCCATTTGATACTCA 3345 Query 202910 TCATTTAAATNNNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtt 202969 ||||| || | || ||||||| |||| | ||| ||||| | Sbjct 3346 TCATTAAATTCTATTGCTATTTTTAAAGCTTCTTTTGGT---TCAAACCACCTTAATAAT 3402 Query 202970 tttttAGCCCAATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTT 203029 ||||||||||||||||||| |||| |||||||||||||| | | | |||||| | | Sbjct 3403 GTTTTAGCCCAATACATTCTACAATAACCATGCATTTTACCCTCTCTTACCATTTGATGT 3462 Query 203030 TGTGATGCATTCCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATAT 203089 || | |||||||||||| | || || ||| | ||||| |||||| | | | ||||| Sbjct 3463 TGAGCTGCATTCCATAATTCATCTTGTGTTTCTCCATTTCTAAGTTGTTCTTTAGTATAT 3522 Query 203090 ATATGTTTTCTAGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCA 203149 | ||| |||| ||||||| || |||| ||||||| || ||| Sbjct 3523 GCTTTAGGTCTTTTATCTAAAGCATGTTCAAGTAAAGTTTCCTTTGCCCATTTTAAAGCT 3582 Query 203150 CCATTTATATTATCGTAA---TTTTCATTATAATAACAAAAATTATCACATAGTTCTTTA 203206 |||| ||||| || ||| |||||| | ||| ||| ||||| ||| || |||| | Sbjct 3583 CCATCAATATTGTCATAATTCTTTTCA-TGTAA-AAC-AAAATGTTCAGATGTTTCTCTC 3639 Query 203207 CGAATAATAGCTTC 203220 | |||| | |||| Sbjct 3640 CATATAAAAACTTC 3653 >seq1869 Length=2780 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || |||||| || ||| |||||||||| ||||| ||||| || || |||| | || | Sbjct 1493 TAAAATGCAGATTTTTGTAAAGACACTTACAGGAAAAACAATTACATTAGAATTAGATCC 1434 Query 124595 AAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGA 124654 | ||||| ||| | | | ||| |||||||||||| ||||||||||| || || || Sbjct 1433 AGCAGATACTATTGAGACTGTTAAAGCGAAAATTCAAGACAAAGAAGGTATTCCTCCAGA 1374 Query 124655 TCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTA 124714 ||||| || ||||| ||||| ||||||||| |||| ||| | |||| | ||||| Sbjct 1373 CCAACAGAGACTTATATTTGCGGGAAAACAACTAGAAGATGGAAGAACTCTGAGTGATTA 1314 Query 124715 TAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || || || || ||| ||||||||| | |||||| | | ||||||||| Sbjct 1313 CAACATACAGAAGGAAAGTACTTTGCATCTTGTTTTAAGACTTAGAGGTGGTA 1261 >seq570 Length=944 Score = 107 bits (118), Expect = 3e-18 Identities = 214/318 (67%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 202873 ATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNNNNNNN 202932 ||||||||| |||||| |||||| || ||| | |||||| || | Sbjct 12 ATATCCATTAGGATCATTTCCATCCATTTGATACTCATCATTAAATTCTATTGCTATTTT 71 Query 202933 NAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAA 202992 || ||||||| |||| | ||| ||||| | ||||||||||||||||||| | Sbjct 72 TAAAGCTTCTTTTGGT---TCAAACCACCTTAATAATGTTTTAGCCCAATACATTCTACA 128 Query 202993 ATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTC 203052 ||| |||||||||||||| | | | |||||| | ||| | |||||||||||| | || Sbjct 129 ATAACCATGCATTTTACCCTCTCTTACCATTTGATGTTGAGCTGCATTCCATAATTCATC 188 Query 203053 ATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTT 203112 || ||| | ||||| |||||| | | | ||||| | ||| |||| Sbjct 189 TTGTGTTTCTCCATTTCTAAGTTGTTCTTTAGTATATGCTTTGGGTCTTTTATCTAAAGC 248 Query 203113 ATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAA---TT 203169 ||||||| || |||| ||||||| || ||| |||| ||||| || ||| || Sbjct 249 ATGTTCAAGTAAAGTTTCCTTTGCCCATTTTAAAGCCCCATCAATATTGTCATAATTCTT 308 Query 203170 TTCATTATAATAACAAAA 203187 |||| | ||| ||||||| Sbjct 309 TTCA-TGTAA-AACAAAA 324 >seq248 Length=11364 Score = 96.9 bits (106), Expect = 5e-15 Identities = 131/177 (74%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 205617 AGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttat 205676 ||||||||| ||||||| | || |||| || | ||| || | ||| ||| | || | Sbjct 10323 AGGATTCCATGCTGTTACAACTAGTCTTCTTGAATAAGGCTTTTCTTTAATTGT--TTCT 10380 Query 205677 AATATGTGTT--AATTGATCAAATCCTTGATTTGTATAATTTGTAT-CCAT-ATCAATAT 205732 ||||||| || || ||||||||||||||||| ||||||| |||| ||| | || Sbjct 10381 AATATGTATTTAAACTGATCAAATCCTTGATTGGTATAATCAGTATGACATGTTTCGTAA 10440 Query 205733 ATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789 | | ||||||||||| |||||||| | ||||| | || ||| | |||| |||||| Sbjct 10441 ACT--GCACCAAAATGTCGCCATTGCCATCCATAGATTGCACCCATATCATCTTCTT 10495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755433865139200