Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1858 206 2e-48 >seq1858 Length=2805 Score = 206 bits (228), Expect = 2e-48 Identities = 617/930 (66%), Gaps = 43/930 (5%) Strand=Plus/Minus Query 15878 AATTAACTTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTG--ACATAA 15935 ||| ||||| ||||||| ||| |||| ||| || || |||| || | ||| || Sbjct 1655 AATAAACTT-AAAAATCTTCATCAAGAGTAAAGTTATCATTGTTTTCATATCCAACAAAA 1597 Query 15936 CTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATG 15995 || |||||||| | | || | || ||||||||||| ||||| |||| |||| Sbjct 1596 CTC-----TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATG 1542 Query 15996 AAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTA---TTTAT-CGCATCCC 16051 |||| || |||||||||| || || ||| | | | ||| |||| | || || Sbjct 1541 AAATGTTGTCCATAAAATGGAATGGGTTT---GGAGTGTTGTAAATTTTAGACTCA-CCT 1486 Query 16052 AATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTC 16111 ||||| | | ||||||||| || | |||||| || |||| ||||| | | ||| Sbjct 1485 AATTCATAAAGTAATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTC 1426 Query 16112 ATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCT 16171 || || |||||||| ||||| | || || | ||||| | ||||||||| | ||| ||| Sbjct 1425 ATCCCAATTAATTTTACAGGTAAAGCCTCAGCAAAAAATTCTTTTTCTATTTCAACTGCT 1366 Query 16172 TCAATGATTATATCTCTTAC-TACACT-ATTTAACGGAGGGTTTAATAAGTGTTTAAACA 16229 ||| || |||||| | | ||| | |||| | | |||| || || || Sbjct 1365 TCACGGACAATATCTTTAATGTACGGTGATTTCTCTCTGA----AATACTCGTG-AAGCA 1311 Query 16230 TTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATG 16289 ||||||||||||| |||||| ||||| ||||| || | || || ||||||| Sbjct 1310 A---ACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATG 1254 Query 16290 TAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAA 16349 ||||| | || | | |||| |||||| | ||||||||| || ||||| || || |||| Sbjct 1253 TAAGAGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAA 1194 Query 16350 AGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttac 16409 |||||||||||||||| |||||||||| || || | | | ||| ||| | Sbjct 1193 AGAATATACCTTCAACACAAGCAAATGCAATCATTCTAGTATC-AAAACTCTCATTTGA- 1136 Query 16410 tttctatccattttttagcccaatttgctttttgtttAACACA--GTTCATGTTCTCTAT 16467 | |||||||| |||||||| || |||| |||| | | | | |||| || || Sbjct 1135 -ATGAATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGT--TCAAT 1079 Query 16468 TGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA--GTAAA 16525 | ||||||||| || | || ||| ||| ||| ||||| | || | Sbjct 1078 ACCGTTAAATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGA 1019 Query 16526 CTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCT 16585 ||| | || ||||| ||| || || | || |||| |||||| | | || Sbjct 1018 GTAT--GTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACT 961 Query 16586 TCGGATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATC 16644 || | || || | |||| ||||||| | |||| ||| |||| ||||| || ||||| Sbjct 960 TCTAACATGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATC 902 Query 16645 GCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC--TGAAAGT 16702 ||||||||| || || || | |||||| ||| || || | || | ||||| Sbjct 901 TGAAGCTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGT 842 Query 16703 TTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCA 16762 || || | ||| | |||||| | || || | ||||| |||||||||| |||| Sbjct 841 TTCAA--AATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCA 784 Query 16763 ACAGCCTTTTTATACATTTTCCATATGTCT 16792 |||||||||||||| ||| || ||| Sbjct 783 GATGCCTTTTTATACATCCCCCAAATCTCT 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462498448398400