Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1858 208 7e-49 >seq1858 Length=2805 Score = 208 bits (230), Expect = 7e-49 Identities = 573/860 (67%), Gaps = 31/860 (4%) Strand=Plus/Minus Query 13913 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13972 |||||||| | | || |||| |||||||| ||||||||||||| || ||| || || Sbjct 1593 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 1534 Query 13973 TCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 |||||||||| ||||| |||| | | | | |||| ||||| ||| | ||| Sbjct 1533 TCCATAAAATGGAATGGGTTTGGAGTGTTGTAAATTTTAGACTCACCTAATTCATAAAGT 1474 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 |||||||| ||||| || ||||| || | | |||| | | |||||| || |||| | Sbjct 1473 AATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAAT 1414 Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 14152 |||||||| | | | ||||||||||||||||| || || || | |||| Sbjct 1413 TTTACAGGTAAAGCCTCAGCAAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATA 1354 Query 14153 ATCGTAATAATTTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACGCA 14209 || | |||| | | || | | | | | || | || ||||| ||| Sbjct 1353 -TCTT--TAATGT------ACGGTGATTTCTCTCTGAAATACTCGTGAAGCAAACAAGCA 1303 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 |||||| ||| | || ||||| || ||||||||| || |||||||| | | || Sbjct 1302 AAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGA 1243 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 | | |||| |||||| ||||||||||||||||| || ||||| ||||||||||| || Sbjct 1242 AGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCT 1183 Query 14330 TCAACTGCAGCAAACGCTATTAATC-GTTCTCCAAACGATGCTTTTTTGTTCGATATCCA 14388 ||||| |||||| || || | || | || |||| || |||| || ||||| Sbjct 1182 TCAACACAAGCAAATGCAATCATTCTAGTATCAAAAC---TCTCATTTGAATGA-ATCCA 1127 Query 14389 TTTTCTAGCCCATTCAGAtttttttttAATA-AAATCCATTGTTTCAATAGCATTAAAT- 14446 ||| |||||| |||| ||||| |||||| || | || ||||||| | |||||| Sbjct 1126 TTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTAAATA 1068 Query 14447 AAATGTTCCT-TCTCTTTAGTACTTG--AAATGTATGTATCAA-TAAGTAAGCTATACAT 14502 |||| | ||| || | | | |||| || || | |||||| | || || || | Sbjct 1067 AAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAG--AG---TATGT 1013 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 ||| || | ||||| |||| || |||| |||||| | | ||||| || Sbjct 1012 CTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAACAT 953 Query 14563 TTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 || | || | ||||||| | ||| ||||||| |||||| |||||||| ||||| Sbjct 952 GTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCTGAAGCTG 894 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAAT 14681 |||| || || | | ||||||| || | | ||| || | | | | ||| ||| Sbjct 893 CAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAAAAT 834 Query 14682 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTT 14741 | ||| |||| || || | ||| ||||| ||||||| |||| || |||| Sbjct 833 CATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGATGCCTTTT 774 Query 14742 TATACATTACCCATATTTCT 14761 ||||||| |||| || ||| Sbjct 773 TATACATCCCCCAAATCTCT 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482331467273920