Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1858 163 4e-35 seq1918 89.7 6e-13 >seq1858 Length=2805 Score = 163 bits (180), Expect = 4e-35 Identities = 554/850 (65%), Gaps = 26/850 (3%) Strand=Plus/Minus Query 33311 TTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 ||| || || ||||||||||| |||| |||||| || || ||||| |||| || || || Sbjct 1573 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 1514 Query 33371 GGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTC 33430 | | ||||||||||| || |||||| ||| |||||||| || | ||||| Sbjct 1513 TGGAGTGTTGTAAATTTTAGACTCACCTAATTCATAAAGTAATCTATCAGCAATAAATTC 1454 Query 33431 TATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGT 33490 || || |||| || | |||||| || || | ||| || || | |||| ||| Sbjct 1453 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 1394 Query 33491 AAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTA----ACGGTTTCTT 33546 || |||||||| ||| || || || | | |||| | || ||||| || Sbjct 1393 AAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATATCTTTAATGTACGGTGATTT 1334 Query 33547 CACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 | ||| || |||| || | |||||| || ||||| |||| ||| | Sbjct 1333 CTCTC------TGAAATACTCGT----GAAGCAAACAAGCAAAATCAGTATGCAAACCTT 1284 Query 33607 CGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAA 33666 | || || ||| | ||| |||||||| || || | || | | || | ||||| | Sbjct 1283 CATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGAAGAATACCTCTTTTTTTCA 1224 Query 33667 GCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 ||||||||| | ||| || ||||| |||||||| || ||||| || |||||| |||| Sbjct 1223 ACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACAAGCAAATGCAA 1164 Query 33727 TAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCT 33786 | | ||| || ||| | | ||| ||||| || |||||||||| ||||| | Sbjct 1163 TCATTCTAGTATCAAAACTCTCATTTGAATGAATCCATTTAAGAGCCCAATCAGCCTTTT 1104 Query 33787 TTTTTACACAAGGCATCGT-TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 33845 | || | | |||| || | ||| || | ||||| | | | | ||| | ||| Sbjct 1103 TCTTAATAGAAGG-ATAATGTTCAATACCGTTAAATAAAATATCCCTCTCACGATCATCC 1045 Query 33846 TTAACATAAGTATCGATCAA--AAGACTATACATTTCCGAATGAATGTTTTCAAT-GGCC 33902 || | | ||| || ||||| ||| ||| | || ||||| |||||||| | | Sbjct 1044 TTGATAAGAGTTTCTATCAACTTAGAGTAT--GTCTCATTATGAACATTTTCAATAGAAC 987 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 || || || | || || | | | || || || | ||| || ||| |||||| Sbjct 986 AT-TGTAAACTATAAAATGACTTCACTTCTAACATGTGAATTTCATTAGTAAAACGTTCT 928 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 |||||||| ||| || || ||||| |||||||| || || | ||| ||| || Sbjct 927 AATAAATTTTGATTAACAATACCATCTGAAGCTGCAAAGAAAGCTAGCACAGTTTTAATG 868 Query 34023 AAATATTTTTCGT-CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 ||| | || || | || || ||| | | ||||||| |||||||| | || | Sbjct 867 AAAAACTTCTCATCCTCGT-TTAAAGTTTCAAAATCATTAGCATCTTTAGTAAAGTCAAT 809 Query 34082 TTCTTCCACTGTCCAAAATGA-TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGAT 34140 |||||| || |||| |||||| || ||||||||||||||| ||| || || || Sbjct 808 TTCTTCAACAGTCC-AAATGACAGCAGATGCCTTTTTATACATCCCCCAAATCTCTGGAA 750 Query 34141 ATTGGATTGG 34150 |||| ||||| Sbjct 749 ATTGAATTGG 740 >seq1918 Length=2592 Score = 89.7 bits (98), Expect = 6e-13 Identities = 305/464 (66%), Gaps = 21/464 (5%) Strand=Plus/Plus Query 62946 ACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 63005 |||||||| || ||||| || || || | | || |||| | ||||| || || |||| Sbjct 383 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 442 Query 63006 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC----TCTTTTTGTTACA 63061 || | |||| || || || ||||| | ||| | ||||||| ||| || | || Sbjct 443 CACAAATTAGAACTTTTAATTGTTCCAAGATTCTTTTGATTAGATAATCTATTGG---CA 499 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 | |||||||||||| ||| | |||||||||||||| || || | | ||| || ||| | Sbjct 500 -GTATCCTTATAAAGCATGTAAGGAGTACCAGTTTCTATTTGTGCTGTTATTATTGCTCT 558 Query 63122 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT-TCGTATAGAGTAT 63180 ||| | || || || || | | ||| || |||| | || || || || || Sbjct 559 CCAAAGATTTCTAG-CTCTAACA-ACCTTTCTA--GACTTTGTTTTCTCATAGTGATGAT 614 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC---TAGGACATTCATCCGGA- 63236 | ||| || || || | || || | | |||| ||| | ||| ||| Sbjct 615 ATAATGATTTAAATTCATTACCATGCACTTCATGTAATCCCTTAGCA---ACATTAGGAT 671 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63296 || || ||| ||| || | || | | |||| || |||||| | |||||| |||||| Sbjct 672 CAAATAAAC-TCCATTCATCATCTTTTTCAACTCTTTCCATAAATAAATCAGGTATCCAA 730 Query 63297 AGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCG 63356 ||||||| ||| | ||||| | | ||||| | || |||||||| | | ||| Sbjct 731 AGAGCTAAAAACATTTCTCTAGCACGCATATCCTCATCACCAGTATTCTTCCTTAAATCT 790 Query 63357 AGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 | || | | |||||| |||||| ||||||||||| || || Sbjct 791 AAAAATTCAAAAATATCTTTATGCCATGGTTCCAAGTAAATAGC 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629799146344320