Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2081 125 7e-24 seq1858 122 8e-23 seq672 91.5 1e-13 >seq2081 Length=2078 Score = 125 bits (138), Expect = 7e-24 Identities = 263/382 (69%), Gaps = 15/382 (4%) Strand=Plus/Plus Query 37772 TAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATAT 37831 |||||||||| | ||| ||||||| ||| | ||||| || ||| ||||| || |||| Sbjct 482 TAATTGTTCCAAGATTCTTTTGATTTGATAATCTATTAGCAGTATCCTTATAAAGCATAT 541 Query 37832 ACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA 37891 | || || || |||||||| ||| ||||| | | |||| | | |||| ||||| | Sbjct 542 AAGGAGTACCAGTCTCTATTTGTGCCATTATAATTGCTCTCCAAAGATTTCTAGCTTTCA 601 Query 37892 CGATCGCTTTAAtttttttCTTTGTTTCGT-ATTCTATATATAATTTGTTAAAATCATTC 37950 | || ||| || || || |||| | || || ||||||| || || ||||| Sbjct 602 CAAT---TTTTCTTGACTTAGTTTTTTCATGATGATA-ATATAATGATTTGAATTCATTA 657 Query 37951 CCCCATACATCGCATAATCC--TGG--ACATTCGCATGGACACATTAGAGACCATTCTTC 38006 || | || || ||| || | | ||||| | || || || | | ||| || | Sbjct 658 CCATACACTTCATGTAACCCCTTAGCAACATTAGGAT---CAAATAA-ACTCCAATCAGC 713 Query 38007 ATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTT 38066 |||||||| || | |||||||||||||||||||| ||| | || | ||||| ||| | Sbjct 714 GTCTTTTTCAACTCTTTCCATAAATAAATCAGGTATCCAAAGAGCTGAAAATATTTCTCT 773 Query 38067 GGTTC-TATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAG 38125 | | ||| ||||| | || |||||| ||||| || ||| || || ||||| Sbjct 774 AGCACGCATA-TCTTCATCACCAGTATTCTTCCTTAAATCTAAAAATTCAAAAATATCTT 832 Query 38126 CGTGCCATGGTTCTATATAAAT 38147 ||||||||||||||| ||||| Sbjct 833 CGTGCCATGGTTCTAAGTAAAT 854 >seq1858 Length=2805 Score = 122 bits (134), Expect = 8e-23 Identities = 353/530 (67%), Gaps = 20/530 (4%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| ||||||||| ||| |||||||| || || || ||||||||||||||||| Sbjct 1311 AAACAAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTA 1252 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 | | || | | |||| |||||| | ||||||||| |||||||| || || |||||| Sbjct 1251 AGAGCAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAG 1192 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCT-TTCTCCATATACCTTGTTGCTAGA 11805 ||||| || || ||| |||||||| | | ||| | || | | | ||| || Sbjct 1191 AATATACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAATGA 1132 Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA-CGCATTCCATTGTTTCTATAGCGT 11864 |||||||| ||||||||||| || || || | | | | || ||| ||| ||| Sbjct 1131 -ATCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGT 1074 Query 11865 TAAATAAATGCATTT---TTTCTATATTATCTCTTACATATGTATCTATTAA--TAAACT 11919 |||||||| || | | || || ||| | | | || ||||| || || | | Sbjct 1073 TAAATAAA---ATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGT 1017 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAA--ACATCGTGCC 11977 || | || ||||| |||||| |||| ||| || | ||| || || || | Sbjct 1016 AT--GTCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTC--ACT 961 Query 11978 TCTGAACA-CTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATC 12036 ||| |||| || | || | ||| | ||| |||||| | ||| ||||||||||| Sbjct 960 TCT-AACATGTGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATC 902 Query 12037 ACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTT 12096 || |||||| || ||||| | | ||| || || | || || || | |||| | Sbjct 901 TGAAGCTGCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGT 842 Query 12097 ATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 || |||||| |||||| | || || | ||||||||| ||||||| Sbjct 841 TTCAAAATCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAA 792 >seq672 Length=876 Score = 91.5 bits (100), Expect = 1e-13 Identities = 298/449 (66%), Gaps = 23/449 (5%) Strand=Plus/Minus Query 37772 TAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATAT 37831 |||| ||||| | ||| ||||||| ||| | ||||| || ||| ||||| || || | Sbjct 436 TAATAGTTCCAAGATTCTTTTGATTTGATAATCTATTAGCAGTATCCTTATAAAGCATGT 377 Query 37832 ACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAA 37891 | || || || ||||||||| || || || | | |||| | | |||| ||| ||| Sbjct 376 AAGGAGTACCAGTTTCTATTTGTGCTGTTATTATTGCTCTCCAAAGATTTCTAGCTCTAA 317 Query 37892 CGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCC 37951 | | | | || ||| | || || || | ||||||| ||||| ||||| | Sbjct 316 CAACCTTTCTAGACTTTGTTTTC---TCATAGTGATGATATAATGATTTAAATTCATTAC 260 Query 37952 CCCATACATCGCATAATCC--TGG--ACATTCGCATGGACACATTAGAGACCATTCTTCA 38007 | | || || |||||| | | ||||| | || || || | | ||||| ||| Sbjct 259 CATACACTTCATGTAATCCCTTAGCAACATTAGGAT---CAAATAA-ACTCCATTAATCA 204 Query 38008 TCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTG 38067 |||||||| || | |||||||||||||||||||| ||| | || ||| | ||| | Sbjct 203 TCTTTTTCAACTCTTTCCATAAATAAATCAGGTATCCAAAGAGCTAAAAACATTTCTCTA 144 Query 38068 GTTC-TATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGC 38126 | | ||| || || | || |||||| ||||| || ||| || || | || Sbjct 143 GCACGCATA-TCCTCATCACCAGTATTCTTCCTTAAATCTAAAAATTCAAAAACGTCTTT 85 Query 38127 GTGCCATGGTTCTATATAAATCG-ACATTGCTCCTGGTCTTTTATCACCTCCCTG---AT 38182 ||||| ||||||| ||||| | ||| |||| || |||| | | ||||||| || Sbjct 84 ATGCCAAGGTTCTAAGTAAATAGCACA-TGCTGATGATCTTCT---AGCTCCCTGTCTAT 29 Query 38183 TAA-TATATCTAACTGTGTTATTATATAT 38210 ||| || || ||| || | |||| |||| Sbjct 28 TAACTAAAT-TAAGTGCATCATTAAATAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468511072223360