Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1858 156 6e-33 seq1918 102 1e-16 >seq1858 Length=2805 Score = 156 bits (172), Expect = 6e-33 Identities = 599/928 (65%), Gaps = 32/928 (3%) Strand=Plus/Minus Query 35812 TTAAAAATCAACATCTAGAGAAAA---ATGATTGTCTTCTTGAG--ACATAACTCCCATT 35866 ||||||||| |||| |||| ||| || ||||| ||| | ||| ||||| Sbjct 1648 TTAAAAATCTTCATCAAGAGTAAAGTTATCATTGTTTTCATATCCAACAAAACTC----- 1594 Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||| || | | | | ||| || || |||||||||||||||| ||||| || || Sbjct 1593 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 1534 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| |||||| || | || |||||||| || |||||| ||| Sbjct 1533 TCCATAAAATGGAATGGGTTTGGAGTGTTGTAAATTTTAGACTCACCTAATTCATAAAGT 1474 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 |||||||| || | |||||| || || |||| || | |||||| || || | | Sbjct 1473 AATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAAT 1414 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 || || || | |||| ||| || |||||||| ||| || || || || | |||| Sbjct 1413 TTTACAGGTAAAGCCTCAGCAAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATA 1354 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAAT---AAATGTTTAAACATCAAACATGCG 36163 | ||| ||| ||||| | | | |||| | | |||||| || Sbjct 1353 TCT-TTAATGT--------ACGGTGATTTCTCTCTGAAATACTCGTGAAGCAAACAAGCA 1303 Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 ||||| || | ||| || || || ||| | ||| || ||||| || || | || Sbjct 1302 AAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGA 1243 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 36283 | | || | ||||| | ||||||||| | ||||| ||||| |||||||| || ||| Sbjct 1242 AGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCT 1183 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 36343 || || ||||| ||||| | ||| || ||| || | ||| ||||| || Sbjct 1182 TCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAATGAATCCATTTA 1123 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGG-CATTGTCTCTATAGCATTAAAGAGATA 36402 |||||||||| ||||| || || | | |||| | ||| || ||| | ||||| | | Sbjct 1122 AGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGT-TCAATACCGTTAAATAAAAT 1064 Query 36403 GtttttttCATTACTATCTTTAACATATGTATCAATCAA--AAGACTATACATTTCCGAA 36460 | | ||| | ||| || | | || || ||||| ||| ||| | || | Sbjct 1063 ATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT--GTCTCATTA 1006 Query 36461 TGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACT 36520 |||| |||||||| | ||| || | || || | | | || || || | | Sbjct 1005 TGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAACATGTGAATT 946 Query 36521 TCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 36580 || || ||| |||||| |||||||| ||| || || || || |||||||| || Sbjct 945 TCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAAGCTGCAAAGAAA 886 Query 36581 GCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTAGTTTATTCCAATCATTGAT 36639 || | ||| ||| || ||| | || || | | || ||| | | ||||||| Sbjct 885 GCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGT-TTAAAGTTTCAAAATCATTAGC 827 Query 36640 ATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA-TGCCTCTGCCTTTTTATACA 36698 |||||||| | || | |||||| || |||| |||||| || |||||||||||||| Sbjct 826 ATCTTTAGTAAAGTCAATTTCTTCAACAGTCC-AAATGACAGCAGATGCCTTTTTATACA 768 Query 36699 TATTCCAGATGTCATGATATTGAATTGG 36726 | ||| || || || |||||||||| Sbjct 767 TCCCCCAAATCTCTGGAAATTGAATTGG 740 >seq1918 Length=2592 Score = 102 bits (112), Expect = 1e-16 Identities = 307/465 (66%), Gaps = 23/465 (5%) Strand=Plus/Plus Query 65739 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 65798 |||||||| || |||||||| || || | | || |||| | ||||| || || |||| Sbjct 383 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 442 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC----TCTTTTTGTTACA 65854 || | |||| || || || ||||| | ||| | ||||||| ||| || | || Sbjct 443 CACAAATTAGAACTTTTAATTGTTCCAAGATTCTTTTGATTAGATAATCTATTGG---CA 499 Query 65855 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 65914 | |||||||||||| ||| | |||||||||||||| || || | | ||| || ||| | Sbjct 500 -GTATCCTTATAAAGCATGTAAGGAGTACCAGTTTCTATTTGTGCTGTTATTATTGCTCT 558 Query 65915 CCAGACGACTCGAGCCTTTATTATAGATTTGTA---TCTCTTTTCTCTTTCGTATAGTG- 65970 ||| | || || || || | | ||| || | | ||||||| |||||| Sbjct 559 CCAAAGATTTCTAG-CTCTAACA-ACCTTTCTAGACTTTGTTTTCTC------ATAGTGA 610 Query 65971 -TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029 ||| ||| || || || | || || | | ||||| | ||| ||| Sbjct 611 TGATATAATGATTTAAATTCATTACCATGCACTTCATGTAATCCCTTAGCAACATTAGGA 670 Query 66030 -CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 66088 || || ||| ||| || | || | | |||| || |||||| | |||||| ||||| Sbjct 671 TCAAATAAAC-TCCATTCATCATCTTTTTCAACTCTTTCCATAAATAAATCAGGTATCCA 729 Query 66089 AAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 66148 |||||||| ||| | ||||| | | ||||| | || |||||||| | | ||| Sbjct 730 AAGAGCTAAAAACATTTCTCTAGCACGCATATCCTCATCACCAGTATTCTTCCTTAAATC 789 Query 66149 GAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGC 66193 | || | | |||||| | |||||| ||||||||||| || || Sbjct 790 TAAAAATTCAAAAATATCTTTATGCCATGGTTCCAAGTAAATAGC 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658153515536960