Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1858 219 4e-52 >seq1858 Length=2805 Score = 219 bits (242), Expect = 4e-52 Identities = 578/863 (67%), Gaps = 37/863 (4%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||||||| | | || |||| |||||||| ||||||||||||| || ||| || || Sbjct 1593 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 1534 Query 13641 TCCATAAAATCAAATGGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATA 13698 |||||||||| ||||| ||| | || |||| |||| ||||| ||| | | Sbjct 1533 TCCATAAAATGGAATGGGTTTGGAGTGTTGTAAAT--TTTAGACTCACCTAATTCATAAA 1476 Query 13699 GTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13758 ||||||||||||||||||| ||||| || | | |||| | | |||||| || |||| Sbjct 1475 GTAATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTA 1416 Query 13759 GTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 ||||||||| | | | ||||||||||||||||| || || || | || Sbjct 1415 ATTTTACAGGTAAAGCCTCAGCAAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAA 1356 Query 13819 TAATTGTAATAATC--TCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGC 13876 || | |||| | | ||| | | | | || | || ||||| || Sbjct 1355 TATCTTTAATGTACGGTGATTTC--------TCTCTGAAATACTCGTGAAGCAAACAAGC 1304 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||||||| ||| | || ||||| || ||||||||| || |||||||| | | || Sbjct 1303 AAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGG 1244 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCC 13996 | | |||| |||||| |||||||||||||||||||| || || ||||||||||| || Sbjct 1243 AAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACC 1184 Query 13997 CTCAACTGCAGCAAACGCTATTAATC-GTTCTCCAAACGATGCTTTTTTGTTCGATATCC 14055 ||||| |||||| || || | || | || |||| || |||| || |||| Sbjct 1183 TTCAACACAAGCAAATGCAATCATTCTAGTATCAAAAC---TCTCATTTGAATGA-ATCC 1128 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATA-AAATCCATTGTTTCAATAGCATTAAAT 14114 |||| |||||| |||| ||||| |||||| || | || ||||||| | |||||| Sbjct 1127 ATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTAAAT 1069 Query 14115 -AAATATTCCT-TCTCTTTAGTACTTG--AAATGTATGTATCAA-TAAGTAAGCTATACA 14169 |||||| ||| || | | | |||| || || | |||||| | || || || Sbjct 1068 AAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAG--AG---TATG 1014 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 | ||| || | ||||| |||| || |||| |||||| | | |||| || Sbjct 1013 TCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAACA 954 Query 14230 ATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 || | ||| ||||||| | ||| ||||||| |||||| |||||||| |||| Sbjct 953 TGTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCTGAAGCT 895 Query 14289 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAA 14348 ||||| || || | | ||||||| || | | ||| || | ||| | ||| || Sbjct 894 GCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAAAA 835 Query 14349 TCGGATAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTT 14406 || || | ||| |||| || || | ||| ||||| ||||||| ||| || | Sbjct 834 TC--ATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGATGCCT 777 Query 14407 TTTTATACATTACCCATATTTCT 14429 |||||||||| |||| || ||| Sbjct 776 TTTTATACATCCCCCAAATCTCT 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479713943969600