Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1858 217 1e-51 >seq1858 Length=2805 Score = 217 bits (240), Expect = 1e-51 Identities = 575/860 (67%), Gaps = 31/860 (4%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 |||||||| | | || |||| ||||| || ||||||||||||| || ||| || || Sbjct 1593 TTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTG 1534 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAAT 13488 |||||||||| |||||| |||| | | | | |||| ||||| ||| | | | Sbjct 1533 TCCATAAAATGGAATGGGTTTGGAGTGTTGTAAATTTTAGACTCACCTAATTCATAAAGT 1474 Query 13489 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 13548 ||||||||||||||||| ||||| || | | |||| | | |||||| || |||| | Sbjct 1473 AATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAAT 1414 Query 13549 TTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 13608 |||||||| | | || ||||||||||||||||| || || || | |||| Sbjct 1413 TTTACAGGTAAAGCCTCAGCAAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATA 1354 Query 13609 ATCTTAATAATGTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACGCA 13665 |||| |||||| | || | | | | | || | || ||||| ||| Sbjct 1353 -TCTT--TAATGT------ACGGTGATTTCTCTCTGAAATACTCGTGAAGCAAACAAGCA 1303 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 |||||| ||| | || ||||| || ||||||||| || |||||||| | | || Sbjct 1302 AAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGA 1243 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 | | |||| |||||| ||||||||||||||||| || ||||| ||||||||||| || Sbjct 1242 AGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCT 1183 Query 13786 TCAACTGCAGCAAACGCTATTAGTC-GTTCTCCAAACGATGCTTTTTTGTTTGATATCCA 13844 ||||| |||||| || || | || | || |||| || |||| ||| ||||| Sbjct 1182 TCAACACAAGCAAATGCAATCATTCTAGTATCAAAAC---TCTCATTTGAATGA-ATCCA 1127 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATA-AAATCCATTGTTTCGATTGCATTGAAT- 13902 ||| |||||| |||| ||||| |||||| || | || ||| || | || ||| Sbjct 1126 TTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTAAATA 1068 Query 13903 AAATGTTCCT-TCTCTTTAGTACTTG--AAATGTATGTATCAA-TAAGTAAGCTATACAT 13958 |||| | ||| || | | | |||| || || | |||||| | || || || | Sbjct 1067 AAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAG--AG---TATGT 1013 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 ||| || | ||||| |||| || |||| |||||| | | ||||| || Sbjct 1012 CTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAACAT 953 Query 14019 TTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 || | || ||||||| | |||| || |||| ||||||||||||||| ||||| Sbjct 952 GTGAATTTCATTAGTAAAA-CGTTCTAATAAATTTTGATTAACAATACCATCTGAAGCTG 894 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 |||| || || | | ||||||| || | | ||| || | ||| | ||| ||| Sbjct 893 CAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAAAAT 834 Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 | ||| |||| || || | ||| ||||| ||||||| ||| || |||| Sbjct 833 CATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGATGCCTTTT 774 Query 14198 TATACATTACCCATATTTCT 14217 ||||||| |||| || ||| Sbjct 773 TATACATCCCCCAAATCTCT 754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478574777348160