Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1858 145 1e-29 seq1918 100 4e-16 >seq1858 Length=2805 Score = 145 bits (160), Expect = 1e-29 Identities = 550/850 (65%), Gaps = 26/850 (3%) Strand=Plus/Minus Query 33033 TTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 ||| || || ||||||||||| |||| |||||| || || ||||| |||| || || || Sbjct 1573 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 1514 Query 33093 GGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTC 33152 | | || |||||||| || |||||| ||| |||||||| || | ||||| Sbjct 1513 TGGAGTGTTGTAAATTTTAGACTCACCTAATTCATAAAGTAATCTATCAGCAATAAATTC 1454 Query 33153 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGT 33212 || || |||| || | |||||| || || | ||| || || | |||| ||| Sbjct 1453 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 1394 Query 33213 AAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA----ACGGTTTCTT 33268 || |||||||| ||| || || || || | |||| | || ||||| || Sbjct 1393 AAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATATCTTTAATGTACGGTGATTT 1334 Query 33269 CACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 | ||| || |||| || | |||||| || ||||| |||| ||| | Sbjct 1333 CTCTC------TGAAATACTCGT----GAAGCAAACAAGCAAAATCAGTATGCAAACCTT 1284 Query 33329 CGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAA 33388 | || || ||| ||||| || ||||| || || | || | | || | ||||| | Sbjct 1283 CATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGAAGAATACCTCTTTTTTTCA 1224 Query 33389 GCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 ||||||||| | ||| || ||||| |||||||| || ||||| || |||||| |||| Sbjct 1223 ACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACAAGCAAATGCAA 1164 Query 33449 TAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCT 33508 | | ||| || ||| | | ||| ||||| || |||||||||| ||||| | Sbjct 1163 TCATTCTAGTATCAAAACTCTCATTTGAATGAATCCATTTAAGAGCCCAATCAGCCTTTT 1104 Query 33509 TTTTTACACAAGGCATCGT-TTCTATGGCATTAAAGAGATAGtttttttCATTACTATCT 33567 | || | | |||| || | ||| || | ||||| | | | | ||| | ||| Sbjct 1103 TCTTAATAGAAGG-ATAATGTTCAATACCGTTAAATAAAATATCCCTCTCACGATCATCC 1045 Query 33568 TTAACATAAGTATCGATCAA--AAGACTATACATTTCCGAATGAATGTTTTCAAT-GGCC 33624 || | | ||| || ||||| ||| ||| | || ||||| |||||||| | | Sbjct 1044 TTGATAAGAGTTTCTATCAACTTAGAGTAT--GTCTCATTATGAACATTTTCAATAGAAC 987 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 || || || | || || | | | || || || | ||| || ||| ||||| Sbjct 986 AT-TGTAAACTATAAAATGACTTCACTTCTAACATGTGAATTTCATTAGTAAAACGTTCT 928 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 ||||||| ||| || || || || |||||||| || || | ||| ||| || Sbjct 927 AATAAATTTTGATTAACAATACCATCTGAAGCTGCAAAGAAAGCTAGCACAGTTTTAATG 868 Query 33745 AAATATTTTTCGT-CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 ||| | || || | || || ||| | | ||||||| |||||||| | || | Sbjct 867 AAAAACTTCTCATCCTCGT-TTAAAGTTTCAAAATCATTAGCATCTTTAGTAAAGTCAAT 809 Query 33804 TTCTTCCACTGTCCAAAATGA-TGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAAT 33862 |||||| || |||| |||||| || ||||||||||||||| ||| || || | Sbjct 808 TTCTTCAACAGTCC-AAATGACAGCAGATGCCTTTTTATACATCCCCCAAATCTCTGGAA 750 Query 33863 ATTGGATTGG 33872 |||| ||||| Sbjct 749 ATTGAATTGG 740 >seq1918 Length=2592 Score = 100 bits (110), Expect = 4e-16 Identities = 306/462 (66%), Gaps = 17/462 (4%) Strand=Plus/Plus Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 |||||||| || |||||||| || || | | || |||| | ||||| || || |||| Sbjct 383 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 442 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC----TCTTTTTGTTACA 63010 || | |||| || || || ||||| | ||| | ||||||| ||| || | || Sbjct 443 CACAAATTAGAACTTTTAATTGTTCCAAGATTCTTTTGATTAGATAATCTATTGG---CA 499 Query 63011 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63070 | |||||||||||| ||| | |||||||||||||| || || | | ||| || ||| | Sbjct 500 -GTATCCTTATAAAGCATGTAAGGAGTACCAGTTTCTATTTGTGCTGTTATTATTGCTCT 558 Query 63071 CCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTG--TA 63128 ||| | || || || || | | ||| || |||| | |||| |||||| | Sbjct 559 CCAAAGATTTCTAG-CTCTAACA-ACCTTTCTA--GACTTTGT-TTTCTCATAGTGATGA 613 Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CA 63187 || ||| || || || | || || | | ||||| | ||| ||| || Sbjct 614 TATAATGATTTAAATTCATTACCATGCACTTCATGTAATCCCTTAGCAACATTAGGATCA 673 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 || ||| ||| || | || | | |||| || |||||| | |||||| |||||||| Sbjct 674 AATAAAC-TCCATTCATCATCTTTTTCAACTCTTTCCATAAATAAATCAGGTATCCAAAG 732 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 ||||| ||| | ||||| | | ||||| | || |||||||| | | ||| | Sbjct 733 AGCTAAAAACATTTCTCTAGCACGCATATCCTCATCACCAGTATTCTTCCTTAAATCTAA 792 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 || | | |||||| |||||| ||||||||||| || || Sbjct 793 AAATTCAAAAATATCTTTATGCCATGGTTCCAAGTAAATAGC 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622928947647040