Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1858 156 5e-33 seq1918 93.3 5e-14 >seq1858 Length=2805 Score = 156 bits (172), Expect = 5e-33 Identities = 550/848 (65%), Gaps = 22/848 (3%) Strand=Plus/Minus Query 32390 TTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATT 32449 ||| || || |||||||||||||||| ||||| || || ||||| |||| |||||| || Sbjct 1573 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 1514 Query 32450 GGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTC 32509 | | || |||||||| || |||||| ||| |||||||| || | |||||| Sbjct 1513 TGGAGTGTTGTAAATTTTAGACTCACCTAATTCATAAAGTAATCTATCAGCAATAAATTC 1454 Query 32510 TATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGT 32569 || || |||| || | |||||| || || | ||| || || | |||| ||| Sbjct 1453 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 1394 Query 32570 AAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACT 32629 || |||||||| ||| || || || || | |||| | ||| ||| Sbjct 1393 AAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATATCT-TTAATGT--------A 1343 Query 32630 CGGTGGATACAAT---AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTC 32686 ||||| | | | |||| | | |||||| || ||||| || | ||| || Sbjct 1342 CGGTGATTTCTCTCTGAAATACTCGTGAAGCAAACAAGCAAAATCAGTATGCAAACCTTC 1283 Query 32687 GTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAG 32746 || || ||| | ||| || ||||| || || | || | | || | ||||| | Sbjct 1282 ATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGAAGAATACCTCTTTTTTTCAA 1223 Query 32747 CCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAAT 32806 ||||||||| | ||||| ||||| |||||||| || ||||| || ||||| ||||| Sbjct 1222 CCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACAAGCAAATGCAAT 1163 Query 32807 AAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 32866 | ||| || ||| | | ||| ||||| || |||||||||| ||||| || Sbjct 1162 CATTCTAGTATCAAAACTCTCATTTGAATGAATCCATTTAAGAGCCCAATCAGCCTTTTT 1103 Query 32867 TTTTACACAAGG-CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTT 32925 || | | |||| | ||| || ||| | ||||| | | | | ||| | ||| | Sbjct 1102 CTTAATAGAAGGATAATGT-TCAATACCGTTAAATAAAATATCCCTCTCACGATCATCCT 1044 Query 32926 TAACATATGTATCAATCAA--AAGACTATACATTTCCGAATGAATGTTTTCAATGGCCAT 32983 | | | || || ||||| ||| ||| | || ||||| |||||||| | Sbjct 1043 TGATAAGAGTTTCTATCAACTTAGAGTAT--GTCTCATTATGAACATTTTCAATAGAACA 986 Query 32984 TTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGC 33043 ||| || | || || | | | || || || | ||| || ||| |||||| Sbjct 985 TTGTAAACTATAAAATGACTTCACTTCTAACATGTGAATTTCATTAGTAAAACGTTCTAA 926 Query 33044 TAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 |||||||| ||| || || || || |||||||| || || | ||| ||| || || Sbjct 925 TAAATTTTGATTAACAATACCATCTGAAGCTGCAAAGAAAGCTAGCACAGTTTTAATGAA 866 Query 33104 ATATTTTTCGT-CTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTT 33162 | | || || | || || ||| | | ||||||| |||||||| | || | || Sbjct 865 AAACTTCTCATCCTCGT-TTAAAGTTTCAAAATCATTAGCATCTTTAGTAAAGTCAATTT 807 Query 33163 CTTCCACTGTCCAAAATGA-TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATAT 33221 |||| || |||| |||||| || ||||||||||||||| ||| || || || || Sbjct 806 CTTCAACAGTCC-AAATGACAGCAGATGCCTTTTTATACATCCCCCAAATCTCTGGAAAT 748 Query 33222 TGAATTGG 33229 |||||||| Sbjct 747 TGAATTGG 740 >seq1918 Length=2592 Score = 93.3 bits (102), Expect = 5e-14 Identities = 305/465 (66%), Gaps = 23/465 (5%) Strand=Plus/Plus Query 62750 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62809 |||||||| || |||||||| || || | | || |||| | ||||| || || |||| Sbjct 383 ACAGATGCAAGGTTACAAACAGCAACATTAGTACCATCTGAATATTCAATAATTTCAGCA 442 Query 62810 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC----TCTTTTTGTTACA 62865 || | |||| || || || ||||| | ||| | ||||||| ||| || | || Sbjct 443 CACAAATTAGAACTTTTAATTGTTCCAAGATTCTTTTGATTAGATAATCTATTGG---CA 499 Query 62866 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 62925 | |||||||||||| ||| | |||||||||||||| || || | | ||| || ||| | Sbjct 500 -GTATCCTTATAAAGCATGTAAGGAGTACCAGTTTCTATTTGTGCTGTTATTATTGCTCT 558 Query 62926 CCAGACGACTCGAGCCTTTATTATAGATTTGTA---TCTCTTTTCTCTTTCGTATAGTG- 62981 ||| | || || || || | | ||| || | | ||||||| |||||| Sbjct 559 CCAAAGATTTCTAG-CTCTAACA-ACCTTTCTAGACTTTGTTTTCTC------ATAGTGA 610 Query 62982 -TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGA 63040 ||| ||| || || || | || || | | | ||| | ||| ||| Sbjct 611 TGATATAATGATTTAAATTCATTACCATGCACTTCATGTAATCCCTTAGCAACATTAGGA 670 Query 63041 -CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63099 || || ||| ||| || | || | | |||| || |||||| | |||||| ||||| Sbjct 671 TCAAATAAAC-TCCATTCATCATCTTTTTCAACTCTTTCCATAAATAAATCAGGTATCCA 729 Query 63100 AAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63159 |||||||| ||| | ||||| | | ||||| | || |||||||| | | ||| Sbjct 730 AAGAGCTAAAAACATTTCTCTAGCACGCATATCCTCATCACCAGTATTCTTCCTTAAATC 789 Query 63160 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 | || | | |||||| |||||| ||||||||||| || || Sbjct 790 TAAAAATTCAAAAATATCTTTATGCCATGGTTCCAAGTAAATAGC 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633613434582400