Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1858 221 1e-52 >seq1858 Length=2805 Score = 221 bits (244), Expect = 1e-52 Identities = 624/937 (67%), Gaps = 31/937 (3%) Strand=Plus/Minus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| |||||| |||| || ||||| || ||| || ||| ||| || ||| || Sbjct 1648 TTAAAAATCTTCATCAAGAGTAAAG---TTATCAT-TGTTTTCATATCCA--ACAAAACT 1595 Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||||| || | | ||||||| ||||||||||| || || |||| ||| || || Sbjct 1594 CTTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTT 1535 Query 92862 ATTCACTAGT--GATTGGATTCTTGGCGTTATAATACTTTTCACCGATC-AACTCGTACA 92918 | || | || ||| || | ||| ||| | ||| || | | || || || | Sbjct 1534 GTCCATAAAATGGAATGGGTTTGGAGTGTTGTAA-ATTTTAGACTCACCTAATTCATAAA 1476 Query 92919 ATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAA 92978 |||||||||||| | |||||| ||||||| | ||| | | |||||| || | | Sbjct 1475 GTAATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTA 1416 Query 92979 GACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 |||||||| ||| || | || || ||||| || ||| |||| ||||| | | Sbjct 1415 ATTTTACAGGTAAAGCCTCAGCAAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAA 1356 Query 93039 TTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAA 93098 | ||| ||| | ||| |||| ||| | | || ||| | || | || || |||| Sbjct 1355 TATCT-TTAATGTAC-----GGTGATTTCTCTCTGAAATACTCGTGAAGCAAACAAGCAA 1302 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || ||||| |||||||| || | ||| || | ||||| ||||| | | | || | Sbjct 1301 AATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGAA 1242 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 | |||| ||| || | ||||||||||| ||||||| || ||||| |||||||||| Sbjct 1241 GAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTT 1182 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT-ACTGCTGATCCAT 93277 | || |||||||| | || | ||||| | | | || | || |||||| Sbjct 1181 CAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTC--ATTTGAATGA--ATCCAT 1126 Query 93278 TTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGG-TAGTGTTTCGATAGCGTTAAATAG 93336 || | ||||||||| || |||||||||||| |||| || || ||| ||| ||||||||| Sbjct 1125 TTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTAAATA- 1068 Query 93337 GTAATCTCGCTCGTCCGA--ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 ||| || ||| ||| ||| || || || || ||| ||| || | ||| Sbjct 1067 -AAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTATGTCTCA 1009 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 ||| ||||| || || | | ||| || | || || | | |||| || || Sbjct 1008 TTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAACATGTGA 949 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 | ||| | || ||| | |||| | ||||| ||| || |||||||| || |||||||| Sbjct 948 ATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAAGCTGCAAAG 889 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCCAATCGGA 93573 ||||| | | | || || ||| |||||||| || ||||| || || |||| Sbjct 888 AAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTT-TCAAAATC-AT 831 Query 93574 TAG-ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGT 93632 ||| |||||| | || || | |||||| |||||||||| || ||| ||||| | Sbjct 830 TAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGATGCCTTTTTAT 771 Query 93633 ACATATCCCATATGTCTTGATATTGAATTGGAAATAT 93669 |||| |||| || ||| || |||||||||| | ||| Sbjct 770 ACATCCCCCAAATCTCTGGAAATTGAATTGGCAGTAT 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556844483978560