Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1858 129 7e-25 seq265 104 3e-17 seq2324 100 4e-16 seq1962 84.2 3e-11 >seq1858 Length=2805 Score = 129 bits (142), Expect = 7e-25 Identities = 539/827 (65%), Gaps = 38/827 (5%) Strand=Plus/Minus Query 115078 TTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCATAAAATCAAAGGGATTT 115137 || ||||| || || ||||| || | | ||| || || |||||||||| || || ||| Sbjct 1572 TTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTTT 1513 Query 115138 TTCGTGTTCCAGATTTTATTGTGACCCACTTGTTTTGATAATCGATCCGCAACATATTCG 115197 ||||| | |||||| | ||| | || | ||||| ||| |||| | |||| Sbjct 1512 GGAGTGTTGTAAATTTTAGACTCACCTAATTCATAAAGTAATCTATCAGCAATAAATTCA 1453 Query 115198 ATATACTCCGACATTTTACCGGAATTCATACCTATGAGACT-ACACGGAAGTGCGTCCGT 115256 || ||||| ||||| | |||||| || || | | ||| | || || || | Sbjct 1452 ATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAA-GCCTCAGC 1394 Query 115257 AATGAATTCTTTTTCGATTGAAACGGCGTCTCTTATAATTTCTTCAATTGTATTTTGAGA 115316 || ||||||||||| ||| ||| || || | | ||| |||| ||| ||| ||| Sbjct 1393 AAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATATCTTTAAT-GTACGGTGA-- 1337 Query 115317 TGGTTTGTTTTTTAACATGT--TGAATAATTCAACCGCAAATTCTTGGTGCATACCTTCA 115374 ||| | | | || | |||| | ||| ||||| || |||| ||||||| Sbjct 1336 ---TTTCTCTCTGAAATACTCGTGAAGCAAACAA--GCAAAATCAGTATGCAAACCTTCA 1282 Query 115375 TCTCGACTTATGAGTTCATTACTAAAACATAA-ACCTGGAAGTAACCCTCTCTTTTTTAA 115433 || | || ||||||||| |||| ||| | | ||||| | ||||| ||||| || Sbjct 1281 TCCCTTGAAATAAGTTCATTAG-AAAATGTAAGAGCAGGAAGAATACCTCTTTTTTTCAA 1223 Query 115434 CCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGCAAAGGC--T 115491 |||||| || ||| |||| || || |||||||||||||||||||| ||||| || | Sbjct 1222 CCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACAAGCAAATGCAAT 1163 Query 115492 AATAAACGT-TCAGCAAATGGTCGTTTCTTATCAAACCACTTCATAGCCCATTTCGCCTT 115550 || || ||| ||| || ||| || || ||| || | |||||| | ||||| Sbjct 1162 CATTCTAGTATCA--AAACTCTCATTT-GAATGAATCCATTTAAGAGCCCAATCAGCCTT 1106 Query 115551 TCTTTCGATACACGGA-ATTGTTTGAATTGCTTCGAATAATTGTTTCTTTTCGCTAGAAT 115609 | | | ||| | ||| | || || ||| | | ||||| | | | || | | || Sbjct 1105 TTTCTTAATAGAAGGATAATG-TTCAATACCGTTAAATAAAATATCCCTCTCACGATCAT 1047 Query 115610 TTTTTATATACTTGTCTATGAGTTTACTGTACGTTTCACCGTGTACCATTTCATTGTGAG 115669 || ||| | ||||| | ||| ||| || ||| || || ||||| | | Sbjct 1046 CCTTGATAAGAGTTTCTATCAACTTAGAGTATGTCTCATTATGAACATTTTCAATAGAAC 987 Query 115670 ATTGATAGGCATAAAATGATCGAGCCTCCGTAAGTTGT--ATTTCATCTGCAAAA--TTA 115725 |||| | ||||||||| | || ||| ||| ||||||| | |||| || Sbjct 986 ATTGTAAACTATAAAATGACTTCACTTC--TAACATGTGAATTTCATTAGTAAAACGTTC 929 Query 115726 TTATTTATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaaaGCTAAAATATATTTT 115785 | | || ||||| | ||| |||||||| ||| | ||||| ||||||| | | ||| Sbjct 928 TAA--TAAATTTTGATTAACAATACCATCTGAAGCTGCAAAGAAAGCTAGCACAGTTTTA 871 Query 115786 ATAAAATGTTTTTCATTATCACTTAA---TTCATTCCAATCATCCATATCTTTGGAAAAG 115842 || ||| || |||| || |||| |||| |||||| |||||| | |||| Sbjct 870 ATGAAAAACTTCTCATCCTCGTTTAAAGTTTCA---AAATCATTAGCATCTTTAGTAAAG 814 Query 115843 TCTATCTCTTCAGCGGTCCAATTTGACATTTG-GGCCTTTTTATACA 115888 || || |||||| | |||||| ||||| | ||||||||||||| Sbjct 813 TCAATTTCTTCAACAGTCCAA-ATGACAGCAGATGCCTTTTTATACA 768 >seq265 Length=6307 Score = 104 bits (114), Expect = 3e-17 Identities = 279/419 (67%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 184010 TTAAGTAAACTCGGCCAGAAATAATGAATCATGTTAAGAATAAGTCCCTTGATATGACTT 184069 || |||||| || | |||| || || | ||||| ||| | ||||| |||||| | Sbjct 5590 TTCAGTAAAGATGGATAAAAATGATCAAAAAAGTTAATAATCAACCCCTTTATATGAGAT 5531 Query 184070 CCATCGTTATCTGCATCGGTCATGATCATGAGTCTTCCGTATCTGAGTTCGGAGAGTGAT 184129 ||||| |||| ||| ||||| ||||| | ||| ||||| | | | || Sbjct 5530 CCATCAAAATCTTGATCTGTCATAATCATAACATGTCCATATCTTAATGATTCAACTGTA 5471 Query 184130 GTATACACTTTCCCTTGCTGAAGCCCCAAAATCTTTTTAAGATCATTAAACTCCTTG-TT 184188 ||| || || || || | || ||||||||||| | || | | |||| ||| || Sbjct 5470 TCATAAACCTTATTATGTTGCAATCCTAAAATCTTTTTTA-ATGAGTTAACTTCTTCATT 5412 Query 184189 TTCGGTAAGTTGTTTTACACTCGCGTCACGCACGTTCTTACATTTACCCC-TAAGCGGAA 184247 ||| | | ||||| | || || | || || | ||| || | ||| |||| Sbjct 5411 TTCACTTATCTGTTTATAAGATGCTTCTCTTACATTTAAAAGTTTTCCACGTAAAAGGAA 5352 Query 184248 AAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTTGCAG 184307 || |||| || | ||| | || ||||| |||||||| |||| || | ||||||||||| Sbjct 5351 AA-CACCATACTTATCTCTTCCTACAACCGAAAGACCTGCAACAGCTAATGTTTTTGCAG 5293 Query 184308 AATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTATTGG 184367 |||| ||||| || | ||| | ||||||| | | | | ||||| || | || | Sbjct 5292 AATCTCCTTCTGTTAAAATCAATGTACACTCTGAACTATTTTTAGTACCAGCATGGTTAG 5233 Query 184368 CATCGTCGAGTTTTGGAATACCCGTT-ATTTTTGATTTACGAGACCCATCTGttttttt 184425 ||||||| | ||| |||||||| ||| |||||| | || | |||||||| ||||| Sbjct 5232 CATCGTCTAATTTAGGAATACCTGTTAATTTTTTACTT-TTTGTTCCATCTGTCTTTTT 5175 >seq2324 Length=1560 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 184244 GGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAATTGCAAGTGTTTTT 184303 || |||||||| || | ||| | || ||||| |||||||| |||| || | ||||||| Sbjct 194 GGGAAAACACCATATTTATCCCTTCCTACAACCGAAAGACCCGCAACAGCTAATGTTTTT 253 Query 184304 GCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGTGGTACCGGCTTTA 184363 |||||||| ||||| || | ||| | ||||||| | | | | ||||| || | | Sbjct 254 GCAGAATCTCCTTCTGTTAAAATCAATGTACACTCTGAACTATTTTTAGTACCAGCATGA 313 Query 184364 TTGGCATCGTCGAGTTTTGGAATACCCGTTATTTT 184398 || |||||||| | ||| |||||||| |||| ||| Sbjct 314 TTAGCATCGTCTAATTTAGGAATACCTGTTAATTT 348 >seq1962 Length=8991 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/146 (73%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 183122 ATATCTAACGGATTAAACGGTGGTATATATGAACTAAATCCGGTACCAATACCTTCAGTT 183181 |||||||| |||||| | |||||| ||| | |||| |||||||||||||||| | Sbjct 8849 ATATCTAAAGGATTATAACATGGTATTGATGTAGACCATCCAGTACCAATACCTTCAGCT 8908 Query 183182 CCATTTACCAAAACGGTCGGTAATATAGGAACATAATAGTCAGGTTCGA---TTTGTTTA 183238 ||||| || || || | || || ||||| || ||||| || ||||| | | | || Sbjct 8909 CCATTGACTAATACCATAGGCAAAATAGGTACGTAATATTCTGGTTCAATACTCAGGTT- 8967 Query 183239 CCGTCGTCGTCGAGATAGTTTAATAC 183264 |||||||| || ||||||||||| Sbjct 8968 --GTCGTCGTTAAGGTAGTTTAATAC 8991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635114190608960