Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1858 212 7e-50 >seq1858 Length=2805 Score = 212 bits (234), Expect = 7e-50 Identities = 620/942 (66%), Gaps = 40/942 (4%) Strand=Plus/Minus Query 36827 TTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCA---- 36882 ||||||||||||||| | ||||| || || || || |||||| | || Sbjct 1648 TTAAAAATCTTCATCAAGAGTAAAGTTA---TCATTGTT----TTCATATCCAACAAAAC 1596 Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 | |||||||| | | || | | || || ||||| || || |||| | ||| || | Sbjct 1595 TCTTTTGATAATTAGCTTCTTTTTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGT 1536 Query 36943 TTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA--TAATTCCTT 37000 | |||||||||| ||||| || | || || || || || || | | |||||| | Sbjct 1535 TGTCCATAAAATGGAATGGGTTTGGAGTGTTGTAAATTTTAG-AC-TCACCTAATTCATA 1478 Query 37001 CAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAAT 37060 || | ||||| |||| |||||| ||||| | || |||| ||| | || || ||||| Sbjct 1477 AAGTAATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAAT 1418 Query 37061 TAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAAC 37120 || |||||| || | || || || |||| |||||||||| || || || Sbjct 1417 TAATTTTACAGGTAAAGCCTCAGCAAAAAATTCTTTTTCTATTTCAACTGCTTC------ 1364 Query 37121 TATATTAACAATAACTTCTTCAGTTGGGGGATATTTT----AAATATTTAAACAATAAAC 37176 | |||||| ||| | || || ||| | | ||||| | | |||| Sbjct 1363 ---ACGGACAATATCTT-TAATGTACGGTGATTTCTCTCTGAAATACTCGTGAAGCAAAC 1308 Query 37177 ATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATC 37236 | ||||||||| ||| ||||||||||| || || | |||||||||||| || | Sbjct 1307 AAGCAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAG 1248 Query 37237 CTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAA 37296 | || | | |||||||||||| | |||||||||||| ||||||||||| |||||||| | Sbjct 1247 CAGGAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATA 1188 Query 37297 TACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAA 37356 |||||||||| |||||||| | | | ||| | ||| | | | ||| || Sbjct 1187 TACCTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAAT---GAA 1131 Query 37357 TCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCA-ATTGTTTCAATTGCTTTT 37415 ||||||| | |||||| |||||| |||| | | | | || |||||| | || Sbjct 1130 TCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATG-TTCAATACCGTTA 1072 Query 37416 AAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA--GTAAACTATACA 37473 || | || | | || | ||| | ||| ||| || || | || | ||| Sbjct 1071 AATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTAT--G 1014 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 | ||| |||| ||||||||||| || |||| |||||| || | |||| | | Sbjct 1013 TCTCATTATGAACATTTTCAATAGAACATTGTAAACTATAAAATGACTTCACTTCTAACA 954 Query 37534 ATTGAACATCGTTA-AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 |||| || ||| ||||| | || ||| |||| |||||| || ||||| |||| Sbjct 953 TGTGAATTTCATTAGTAAAACGTTCTA-ATAAATTTTGATTAACAATACCATCTGAAGCT 895 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAA 37652 ||||||||||| || ||| ||| || ||| | ||||| | ||| ||| || Sbjct 894 GCAAAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAAAA 835 Query 37653 TCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGT 37712 |||||| |||||| | || |||| ||| ||||| ||||||| || |||| | Sbjct 834 TCATTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCCAAATGACAGCAGATGCCTTT 775 Query 37713 TTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATT 37754 ||||||||| |||||| || | ||| ||||| | |||| Sbjct 774 TTATACATCCCCCAAATCTCTGGAAATTGAATTGGCAGTATT 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592299445117760