Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq2081 131 9e-26 seq1918 109 3e-19 seq672 95.1 6e-15 >seq2081 Length=2078 Score = 131 bits (144), Expect = 9e-26 Identities = 134/175 (77%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 25885 AATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944 || ||| ||| |||||| ||||||||| | || |||||| | |||||||||||||| Sbjct 684 AACATTAGGATCAAATAAACTCCAATCAGCGTCTTTTTCAACTCTTTCCATAAATAAATC 743 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 || ||||| | || |||||| ||||| || | ||| ||||| | || |||||| Sbjct 744 AGGTATCCAAAGAGCTGAAAATATTTCTCTAGCACGCATATCTTCATCACCAGTATTCTT 803 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCA 26059 ||| |||||| || |||||||||||| ||||||||||||||| || |||||| Sbjct 804 CCTTAAATCTAAAAATTCAAAAATATCTTCGTGCCATGGTTCTAAGTAAATAGCA 858 >seq1918 Length=2592 Score = 109 bits (120), Expect = 3e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 25885 AATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944 || ||| ||| |||||| ||| ||| ||| || |||||| | |||||||||||||| Sbjct 661 AACATTAGGATCAAATAAACTCCATTCATCATCTTTTTCAACTCTTTCCATAAATAAATC 720 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 || ||||| | || |||| | ||||| || | ||| || || | || |||||| Sbjct 721 AGGTATCCAAAGAGCTAAAAACATTTCTCTAGCACGCATATCCTCATCACCAGTATTCTT 780 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCA 26059 ||| |||||| || |||||||||||| ||||||||||| || || |||||| Sbjct 781 CCTTAAATCTAAAAATTCAAAAATATCTTTATGCCATGGTTCCAAGTAAATAGCA 835 >seq672 Length=876 Score = 95.1 bits (104), Expect = 6e-15 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 25885 AATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATC 25944 || ||| ||| |||||| ||| | | ||| || |||||| | |||||||||||||| Sbjct 234 AACATTAGGATCAAATAAACTCCATTAATCATCTTTTTCAACTCTTTCCATAAATAAATC 175 Query 25945 TGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTT 26004 || ||||| | || |||| | ||||| || | ||| || || | || |||||| Sbjct 174 AGGTATCCAAAGAGCTAAAAACATTTCTCTAGCACGCATATCCTCATCACCAGTATTCTT 115 Query 26005 TTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCA 26059 ||| |||||| || ||||||| ||| ||||| |||||||| || |||||| Sbjct 114 CCTTAAATCTAAAAATTCAAAAACGTCTTTATGCCAAGGTTCTAAGTAAATAGCA 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253032771279800