Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1858 158 2e-33 seq1869 107 3e-18 >seq1858 Length=2805 Score = 158 bits (174), Expect = 2e-33 Identities = 592/914 (65%), Gaps = 33/914 (4%) Strand=Plus/Minus Query 17779 AAATATTGATTTTGAATATATTTTTTATAATTAAA--AACTTGAA--TCTGTCGTGAAGA 17834 ||||| ||||| |||| |||| ||| | | ||| ||||| || ||| || | |||| Sbjct 1687 AAATAAAAATTTTAAATAAATTTATTA-ACTAAAATAAACTTAAAAATCT-TCATCAAGA 1630 Query 17835 -TAAAATCATCATTTTTATCA-----AAATTAGCTTTTTTG-TATTCTCCGACTTTTTTC 17887 |||| | |||||| || ||| || | || ||||| || | | |||||||| Sbjct 1629 GTAAAGTTATCATTGTTTTCATATCCAACAAAACTCTTTTGATAATTAGCTTCTTTTTTC 1570 Query 17888 TCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTAGTG 17947 || |||||||| || || |||| |||||| || | |||||||| ||||| || | Sbjct 1569 TCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTTTGGA 1510 Query 17948 GTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACAAATTCGACA 18007 || || ||| ||| | |||||| || | ||||||||| || | |||||| | Sbjct 1509 GTGTTGTAAATTTTAGACTCACCTAATTCATAAAGTAATCTATCAGCAATAAATTCAATG 1450 Query 18008 TATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAATAATA 18067 || | ||| | |||||| || | || | | | ||||| ||| ||| || | Sbjct 1449 TACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGCAAAA 1390 Query 18068 AATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTGGCAAT 18127 |||||||| ||||| ||||| | || | || | | ||| || || || Sbjct 1389 AATTCTTTTTCTATTTCAACTGCTTCACGGACAATATCT-TTAATGTAC-----GGTGAT 1336 Query 18128 TTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCT 18187 || | | || || | | | ||||| ||||||||||| || ||||||||||| Sbjct 1335 TTCTC---TCTGAAATACTCGTGAAGCAAACAAGCAAAATCAGTATGCAAACCTTCATCC 1279 Query 18188 CTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAA 18247 || || || | ||| ||| ||| || | | || | |||||||||||||| | |||| Sbjct 1278 CTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGAAGAATACCTCTTTTTTTCAACCAA 1219 Query 18248 AATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAAT 18307 ||||| | || ||| | |||||||||||||| ||||| || || || || || | | Sbjct 1218 AATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACAAGCAAATGCAATCATT 1159 Query 18308 CTTTCAGCAAAACTGT-ATTT-ATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNN 18365 || | ||||||| | |||| | | | |||||||| | ||||| || | | Sbjct 1158 CTAGTATCAAAACTCTCATTTGAAT-----GAATCCATTTAAGAGCCCAATCAGCCTTTT 1104 Query 18366 NNNNNATACACGGTATACT-CTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCT 18424 ||| | || ||| | || ||| | ||||| ||| ||| | || ||| Sbjct 1103 TCTTAATAGAAGG-ATAATGTTCAATACCGTTAAATAAAATATCCCTCTCACGATCATCC 1045 Query 18425 TTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATC 18484 || ||| ||| || || ||| ||| || | ||| ||| | |||| |||| Sbjct 1044 TTGATAAGAGTTTCTATCAACTTAGAGTATGTCTCATTATGAACATTTTCAATAGAACAT 985 Query 18485 TGAAAACTATAAAACGATCTAGCCTCGGGATAT-TGAATCTCGCTATAAAATCTTTCTAC 18543 || ||||||||||| || || || | || ||||| || || ||| | ||||| Sbjct 984 TGTAAACTATAAAATGA-CTTCACTTCTAACATGTGAATTTCATTAGTAAAACGTTCTAA 926 Query 18544 CAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAA 18603 ||||| | |||||| ||||| || | || ||| || || || | ||| ||||||||| Sbjct 925 TAAATTTTGATTAACAATACCATCTGAAGCTGCAAAGAAAGCTAGCACAGTTTTAATGAA 866 Query 18604 ATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTC 18663 | || |||| || || | | | | | |||| |||||| | | |||| ||| Sbjct 865 AAACTTCTCATCCTCGTTTAAAGTTTCAAAATCATTAGCATCTTTAGTAAAGTCAATTTC 806 Query 18664 TTCCGATGTCCAAA 18677 ||| ||||||| Sbjct 805 TTCAACAGTCCAAA 792 >seq1869 Length=2780 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||||||||| || ||| | || ||| | || |||||||| |||||||||||| | || Sbjct 1493 TAAAATGCAGATTTTTGTAAAGACACTTACAGGAAAAACAATTACATTAGAATTAGATCC 1434 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 | |||| |||| | || ||| ||||| ||||| |||||||| || |||||||| Sbjct 1433 AGCAGATACTATTGAGACTGTTAAAGCGAAAATTCAAGACAAAGAAGGTATTCCTCCAGA 1374 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||| ||| | || | ||| || || || || |||||| |||||| | ||||| Sbjct 1373 CCAACAGAGACTTATATTTGCGGGAAAACAACTAGAAGATGGAAGAACTCTGAGTGATTA 1314 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||| || || || | ||| | || |||||| | ||||| ||| Sbjct 1313 CAACATACAGAAGGAAAGTACTTTGCATCTTGTTTTAAGACTTAGAGGTGGT 1262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731850556150400