Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1858 201 2e-46 seq1869 132 9e-26 >seq1858 Length=2805 Score = 201 bits (222), Expect = 2e-46 Identities = 521/788 (66%), Gaps = 34/788 (4%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTT----TCTCCTATCAATACATATA 49647 |||||||| ||||| ||| || || ||| ||||| || |||| || |||| | Sbjct 1531 CATAAAATGGAATGGGTTTGGAGTGTTGTAA-ATTTTAGACTCACCTA---ATTCATAAA 1476 Query 49648 ATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATA 49707 ||||||||| || | |||||||| || | |||| || | |||||| || | || Sbjct 1475 GTAATCTATCAGCAATAAATTCAATGTACTCACTCATTTGTTTAGCATTCATCCCAATTA 1416 Query 49708 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 49767 |||| | ||||| || ||| ||| |||||||||||||||||| || |||| | | Sbjct 1415 ATTTTACAGGTAAAGCCTCAGCAAAAAATTCTTTTTCTATTTCAACTGCTTC---ACGGA 1359 Query 49768 tcataattatattattttttgataatttatatttaatatgattcgcatatattaaACATG 49827 ||| | ||| | | | | |||| | | | | || | ||| | | ||||| | Sbjct 1358 CAATATCT---TTAATGTACGGTGATTTCTCTCTGAAAT-ACTCG--TGAAGCAAACAAG 1305 Query 49828 CAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 49887 ||||||||||||| ||||| || ||||| || |||| ||||||| ||| || | | | Sbjct 1304 CAAAATCAGTATGCAAACCTTCATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAG 1245 Query 49888 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 49947 | | | ||||| ||||| | ||||||||||| |||||| | ||||||||||||| Sbjct 1244 GAAGAATACCTCTTTTTTTCAACCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATAC 1185 Query 49948 CCTCGACACACGCAAATGCTATTATTCTTG-CTCCAAACATTAATTT--ATCATCTAATA 50004 | || ||||| |||||||| || ||||| | || |||| | |||| || | | Sbjct 1184 CTTCAACACAAGCAAATGCAATCATTCTAGTATCAAAACTCTCATTTGAATGA------A 1131 Query 50005 TCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 50064 |||| || | ||||||||| || ||||| || |||||||| || ||| ||| | |||| Sbjct 1130 TCCATTTAAGAGCCCAATCAGCCTTTTTCTTAATAGAAGGATAATGTTCAATACCGTTAA 1071 Query 50065 ATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTT 50124 |||| || | ||| || || ||| || | | Sbjct 1070 ATAAAATATCCCTCTCACGATCATCCTTGATAAGAGTTTCTATCAACTTAGAGTATGTCT 1011 Query 50125 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTT-GCTTCTGAATAC 50183 || ||| ||| ||| |||| ||| || |||||| || ||| ||||| | Sbjct 1010 CATTATGAACATTTTCAATAGAACATTGTAAACTATAAAA-TGACTTCACTTCTAACATG 952 Query 50184 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 50243 |||| ||| | || ||||| | |||||| | | ||||||||||| || ||||| Sbjct 951 TGAATTTCATTAGTAAAACGTTCTAATAAATTTTGATTAACAATACCATCTGAAGCTGCA 892 Query 50244 AAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGAT 50303 ||||| |||| || |||||| ||| || |||| || |||||| |||| || Sbjct 891 AAGAAAGCTAGCACAGTTTTAATGAAAAACTTCTCATCCTCGTTTAAAGTTTCAAAATCA 832 Query 50304 TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGAT---TTT 50360 | | ||| || | || || | |||||| | |||| |||||| | | ||| ||| Sbjct 831 TTAGCATCTTTAGTAAAGTCAATTTCTTCAACAGTCC-AAATGA--CAGCAGATGCCTTT 775 Query 50361 TTATACAT 50368 |||||||| Sbjct 774 TTATACAT 767 >seq1869 Length=2780 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAG 192367 ||||||||||||| | ||| || | ||| |||||| || || || || |||||| Sbjct 1261 TACCACCTCTAAGTCTTAAAACAAGATGCAAAGTACTTTCCTTCTGTATGTTGTAATCAC 1320 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | |||| | |||| || | |||||| || ||||| || | ||||||||| || || | Sbjct 1321 TCAGAGTTCTTCCATCTTCTAGTTGTTTTCCCGCAAATATAAGTCTCTGTTGGTCTGGAG 1380 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | || |||||||| ||||| ||||| ||| ||| | |||| ||||| | |||| Sbjct 1381 GAATACCTTCTTTGTCTTGAATTTTCGCTTTAACAGTCTCAATAGTATCTGCTGGATCTA 1440 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 ||||| ||||| ||||| || || | ||| || | ||| |||||||||||| Sbjct 1441 ATTCTAATGTAATTGTTTTTCCTGTAAGTGTCTTTACAAAAATCTGCATTTTA 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984450433604400