Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1405 102 1e-16 seq121 84.2 3e-11 >seq1405 Length=3791 Score = 102 bits (112), Expect = 1e-16 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 192949 TAAATTATCCACAAAAACCCCTTGTTACCACA-GATAT-TGCAAAATTTAATAAATTAGA 193006 ||| ||||||||| ||||| | || || ||| | | | || || | |||| || | | Sbjct 2242 TAATTTATCCACAGAAACCTTTAGTAACTACACGTTCTATGGAATACTTAAAGTATAA-A 2184 Query 193007 CGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCA 193066 |||| || | ||| ||| |||||||||||| ||||| ||||||||||||||||| Sbjct 2183 GAATTA-CCTAGTGGACAGAATTGTATTGTTGCTATTGCTTGTTATACTGGTTATAATCA 2125 Query 193067 AGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGGTACTATAAC 193126 ||||| |||||| | |||| ||| ||||||| ||||| |||||| | | | | Sbjct 2124 GGAAGATTCAATTATTATGAATAGGGCTGCTATTGATAGAGGGTTATTTAGATCATTTAT 2065 Query 193127 TTATAATACATATACAGTTGAAGAAACAA 193155 ||||| |||||| | | | |||||| || Sbjct 2064 TTATAGAACATATTCTGATCAAGAAAAAA 2036 Score = 89.7 bits (98), Expect = 7e-13 Identities = 143/199 (72%), Gaps = 15/199 (8%) Strand=Plus/Minus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 || ||||| || || ||||||||||| | | ||||||||||| | |||||||||||| Sbjct 1382 ATCTTTATTGGACCTACTTATTATCAAAGATTAAAACATATGGTAGATGATAAAATGCAT 1323 Query 193854 GCTAG---AAGT----CATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCG 193906 | ||| ||| ||| |||||| |||| ||| |||||||| | || | Sbjct 1322 GGTAGGGCAAGAGGACCATT-ACAAGT-ACTA----ACAA-GACAACCAGTTGAAGGAAG 1270 Query 193907 TTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGG 193966 || || |||||| |||||||||||||||||||| | ||| ||||| | |||||| Sbjct 1269 GTCAAGAGATGGAGGATTAAGATTTGGAGAAATGGAAAGAGATTGTATGATCTCTCATGG 1210 Query 193967 TGCTACT-CAATTCTTGAA 193984 | || || || ||||| || Sbjct 1209 TACTGCTGCATTTCTTAAA 1191 Score = 82.4 bits (90), Expect = 1e-10 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 193401 GATGGTTGTAGAATAGTTAAAGTTGTTATTGGTCAGTTACGTATACCTGAAATAGGGGAT 193460 ||||||| |||| | |||| ||| || | ||| | |||||||||| || ||| Sbjct 1760 GATGGTTATAGATTCTTTAAGGTTAAAATAAGAAGTTTAAGAATACCTGAAAGGGGTGAT 1701 Query 193461 AAATTTTGTTCAGGAATGGCCCAAAAAGGAACTTGTGGTATGATTTATTCACAAGAAGAT 193520 |||||| ||| || || || |||||||| || || |||| ||||| ||| Sbjct 1700 AAATTTGCTTCTAGACATGCTCAGAAAGGAACAATAGGAATTATTTTAGATCAAGAGGAT 1641 Query 193521 ATGCCATTTACAGCTTCAGGTATGGTACCAGATATTATTATTAATCCAAATTGTATTCCA 193580 |||||||||||| | ||||| | || || || ||||||||||| || ||| ||| Sbjct 1640 ATGCCATTTACATGTGAGGGTATCATTCCTGACATAATTATTAATCCTCATGCTATCCCA 1581 Query 193581 TCCAGAATGACCATT 193595 || | ||||| ||| Sbjct 1580 TCTCGTATGACTATT 1566 >seq121 Length=1372 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/230 (69%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 51834 CTTGAAGTTGGAGACTTGGTTAAAAGACAATTGATGGATGGTGATGATGTACTATTAAAT 51893 |||||| ||||| | ||| ||||||| || |||| ||| | ||| || || ||| Sbjct 349 CTTGAAATTGGATCTGTTGTTGAAAGACATTTACAAGATGATGACGTTGTTCTCTTCAAT 408 Query 51894 AGGCAACCAACACTTCATAAAGCTTCTATG------CAAAGTTTTAAAGTTAAAATTCAA 51947 || ||||| ||||||| ||| |||||| || || |||| || |||| | Sbjct 409 AGACAACCTTCACTTCACAAAATGTCTATGATGGCTCACAGAATTAAGGT---AATTAA- 464 Query 51948 CCAGTAAAAACATTTAAAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGAT 52007 |||||||| | |||| | ||| | | |||| | |||||||| ||||||||| Sbjct 465 -CAGTAAAA-CTTTTACTGTAAATCTTAGTGCAACTACTCCTTATAATGCAGATTTTGAT 522 Query 52008 GGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGA 52057 || |||||||||||| |||| || || || | ||| | ||| ||||| Sbjct 523 GGTGATGAAATGAATGTACACGTACCACAGACTTATTTAACTAAGGCTGA 572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635158989296320