Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1952 167 2e-35 seq265 141 7e-28 seq2324 129 4e-24 seq239 109 4e-18 seq2254 105 5e-17 seq121 100 2e-15 seq1343 93.3 3e-13 >seq1952 Length=9020 Score = 167 bits (184), Expect = 2e-35 Identities = 219/302 (73%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||||||||||||| ||||| || ||| ||||| || | | ||||||| || | || Sbjct 3408 TATCAAAATCTTCTCCTCCTAAAAAAGTGTTTCCATTTGTTGATTTTACTTGAAAGATTC 3467 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 |||||| | ||||| || || |||| ||||| || || | |||| ||| || Sbjct 3468 CATCTTTTATTTCCAAAATAGAAATATCAAATGTTCCTCCTCCTAAATCATAAACTGCTA 3527 Query 282312 CATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 || |||| ||| || |||||||| ||||| || ||||| || | ||||||| Sbjct 3528 TATAACCTTCT----CTT--TTCTTATCAAGTCCATAAGCTAAAGCGGCTGTCGTTGGTT 3581 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 |||||||||||||||||||||| ||| | | | || |||||||| | ||||||| Sbjct 3582 CATTAATAATTCTCAAAACATTCCAACCTGTTAATTGACCAGCATCTTTTATTGCTTGTC 3641 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAA 282491 | || | ||| ||||||||||| |||||||||||||| ||| | ||| || || |||| Sbjct 3642 TCTGAGTATCATTAAAATATGCTGGAACAGTAATAACAGCAGATCCTACATCCTTACCAA 3701 Query 282492 TA 282493 || Sbjct 3702 TA 3703 Score = 96.9 bits (106), Expect = 3e-14 Identities = 194/289 (67%), Gaps = 19/289 (7%) Strand=Plus/Plus Query 85960 TCAAAATCTTCTCCTCCCAAATGTGTATTACCACCTACTGCCAATGTTCT--AAATACTC 86017 ||||||||||||||||| ||| || || ||| | || | | | || ||| | || Sbjct 3410 TCAAAATCTTCTCCTCCTAAAAAAGTGTTTCCATTTGTTG--ATTTTACTTGAAAGATTC 3467 Query 86018 CATTTGAGATATTCATTAACGAAACATCTAATGTCCCAGCTCCTAAGTCATAAACAATTA 86077 ||| | || | || | |||| ||| ||||| || ||||||| |||||||| || Sbjct 3468 CATCTTTTATTTCCAAAATAGAAATATCAAATGTTCCTCCTCCTAAATCATAAACTGCTA 3527 Query 86078 CGTTACCACCAGtttttttATTCCATTTTTCACTTCCTAAACCGTATGCAAGAGCTGCTG 86137 | ||| | |||| |||| | | || || || | ||| |||| Sbjct 3528 TATAACCTTCTCTTTTCTTAT---------------CAAGTCCATAAGCTAAAGCGGCTG 3572 Query 86138 CAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAG 86197 |||||||||||||| ||| | | ||||| |||| | | || | ||| ||| Sbjct 3573 TCGTTGGTTCATTAATAATTCTCAAAACATTCCAACCTGTTAATTGACCAGCATCTTTTA 3632 Query 86198 TTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAACTGC 86246 ||||||||||||| | ||||||||||||||||| ||||||||||| || Sbjct 3633 TTGCTTGTCTCTGAGTATCATTAAAATATGCTGGAACAGTAATAACAGC 3681 >seq265 Length=6307 Score = 141 bits (156), Expect = 7e-28 Identities = 249/363 (69%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 400252 AAATTATATAATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTG 400311 |||||| | ||||| || | || || || ||| | | | | ||||| | ||||| Sbjct 5220 AAATTAGACGATGCTAACCATGCTGGTACTAAAAATAGTTCAGAGTGTACATTGATTTTA 5279 Query 400312 ACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAGAT 400371 ||||| |||||||| || |||||||| ||| | | || ||| ||| | ||||||||| Sbjct 5280 ACAGAAGGAGATTCTGCAAAAACATTAGCTGTTGCAGGTCTTTCGGTTGTAGGAAGAGAT 5339 Query 400372 TATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaa 400431 | ||||| ||||||| | | ||||||||||| ||||| || || || | |||| Sbjct 5340 AAGTATGGTGTTTTCCTTTTACGTGGAAAACTTTTAAATGTAAGAGAAGCATCTTATAAA 5399 Query 400432 aaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGGACTTGAACAAGGA 400491 | || || ||||| ||| ||| || | ||||| ||| | ||| | |||| Sbjct 5400 CAGATAAGTGAAAATGAAGAAGTTAACTCATTAAAAAAGATTTTAGGATTGCAACATAAT 5459 Query 400492 AAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATGATTCTTGCTGATCAA 400551 || ||||||||| | || ||| ||||||| | |||||||| | | |||||| Sbjct 5460 AAGGTTTATGATACAGTTGAATCATTAAGATATGGACATGTTATGATTATGACAGATCAA 5519 Query 400552 GATGTTGATGGGTACCATATCAAAGGATTAATCATGAATTTTATCCATTGTTTTTGGCCA 400611 ||| ||||||| | ||||| || || || || || || ||| | || ||||| ||| Sbjct 5520 GATTTTGATGGATCTCATATAAAGGGGTTGATTATTAACTTTTTTGATCATTTTTATCCA 5579 Query 400612 TCT 400614 ||| Sbjct 5580 TCT 5582 >seq2324 Length=1560 Score = 129 bits (142), Expect = 4e-24 Identities = 198/281 (70%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| | ||||| ||||| |||||||| || |||||||| ||| | | || ||| Sbjct 285 TGTACATTGATTTTAACAGAAGGAGATTCTGCAAAAACATTAGCTGTTGCGGGTCTTTCG 226 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 ||| | ||||| ||| | ||||| |||||||| | | ||||||||||| ||||| || Sbjct 225 GTTGTAGGAAGGGATAAATATGGTGTTTTCCCTTTACGTGGAAAACTTTTAAATGTAAGA 166 Query 400417 GATGCTAGTCCTaaaaaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTT 400476 || || | |||| |||| || ||||| ||| ||| || | ||||| ||| | Sbjct 165 GAAGCATCTTATAAACAAATAAGTGAAAATGAAGAAGTTAACTCACTAAAAAAGATTTTA 106 Query 400477 GGACTTGAACAAGGAAAAGTTTATGATGATCTCAAAGGTTTACGATATGGTAGTATTATG 400536 ||| | |||| || ||||||||| | || ||| ||||||| | ||||| Sbjct 105 GGATTGCAACATAATAAGGTTTATGATACGGTTGAATCATTAAGATATGGACATGTTATG 46 Query 400537 ATTCTTGCTGATCAAGATGTTGATGGGTACCATATCAAAGG 400577 ||| | | ||||||||| ||||||| | ||||| ||||| Sbjct 45 ATTATGACAGATCAAGATTTTGATGGATCTCATAT-AAAGG 6 >seq239 Length=6437 Score = 109 bits (120), Expect = 4e-18 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 131149 TAATTTTATCAATAATAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTAT 131208 |||||||| || ||| |||| | |||||||||| |||||||||||||| ||||| || Sbjct 5883 TAATTTTAATAACAATGTAATACAGGTTGTAGTAGCAACAATAGCATTTGGAATGGGAAT 5824 Query 131209 TAATAAACCGGATGTTAGAGTTGTTATTCATTACGGAGCTCCCAAGAATATTGAAGGTTA 131268 ||||||| ||||| ||| |||| |||||||| | || ||| ||||||| || Sbjct 5823 AGATAAACCAGATGTAAGATTTGTAATTCATTATTCAATACCAAAGTCACTTGAAGGATA 5764 Query 131269 TTATCAAGAAATTGGTAGAGCAGGT 131293 ||||||||||| || || || ||| Sbjct 5763 TTATCAAGAAACAGGAAGGGCTGGT 5739 >seq2254 Length=1678 Score = 105 bits (116), Expect = 5e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 435126 ACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTAT 435185 ||||| |||||||||||| || | |||| |||||||||||||||||| |||||||||| Sbjct 104 ACCTTATGAATTTTTCTTTCACGCTATGGGAGGTCGTGAAGGTATTATTGATACAGCTAT 163 Query 435186 TAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAA 435245 ||||||| | || | ||| || ||||||||||| | | |||| | |||||| ||| Sbjct 164 TAAAACTTCAGAGATTGGGTACATTCAAAGAAAGTTAATTAAGACTATGGAAGATGCTAA 223 Query 435246 A 435246 | Sbjct 224 A 224 >seq121 Length=1372 Score = 100 bits (110), Expect = 2e-15 Identities = 164/235 (70%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 432287 AGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACG 432346 ||||||||| || | |||||||| ||||||||| || | || ||| | |||||||| Sbjct 69 AGGTAAAGAGGGAAGAATTAGAGGTTGTTTGATGGGTAAAAGAGTTGATTTTTCTGCACG 128 Query 432347 TACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTAT 432406 ||| || |||||| ||||| ||| |||| || || || |||| ||||| | | | Sbjct 129 TACTGTAATTACTCCTGATAGTAACATTGAACTTGATCAAATTGGATTTCCTATTAAGTT 188 Query 432407 TGCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGATTATTTGACTCA 432466 || |||| | | || ||| |||| |||||| | ||||| | | | || | Sbjct 189 AGCTAAAATTTTAACATTTCCTGAAAAAGTAACACCATTTAATAATCAAAAGTTACAGAA 248 Query 432467 ATTAGTGAAAAATGGTAAAAGAGTATATCCAGGTGCCAATTTTGTAATCA-AACA 432520 || | || |||||| || | |||||||||||| |||| |||||||| |||| Sbjct 249 ATGTATTAATAATGGTCCAACTGAATATCCAGGTGCTAATTATGTAATCAGAACA 303 >seq1343 Length=599 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 131105 TATCATGCAGGTTTATCAAACGAACACAAGACAAAAACT-CATACTAATTTTATCAATAA 131163 ||||||||||||||||| || | | |||| | | || |||||||| || || Sbjct 143 TATCATGCAGGTTTATCTAAAAGAGA-AAGAGTGTCAGTTCAAGATAATTTTAATAACAA 85 Query 131164 TAAAATAAAAATTGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGT 131223 | |||| | |||||||||| |||||||||||||| ||||| || ||||||| ||||| Sbjct 84 TGTAATACAGGTTGTAGTAGCAACAATAGCATTTGGAATGGGAATAGATAAACCAGATGT 25 Query 131224 TAGAGTTGTTATTCATTA 131241 ||| |||| |||||||| Sbjct 24 AAGATTTGTAATTCATTA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740515319505744