Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1858 237 4e-57 seq121 163 7e-35 seq2190 107 5e-18 >seq1858 Length=2805 Score = 237 bits (262), Expect = 4e-57 Identities = 551/818 (67%), Gaps = 21/818 (3%) Strand=Plus/Plus Query 131465 ATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGAT 131524 |||||||| || | ||| | | | |||||||||||||| || || | || |||||| Sbjct 767 ATGTATAAAAAGGCATCTGCTGTCATTTGGACTGTTGAAGAAATTGACTTTACTAAAGAT 826 Query 131525 ATTGATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAA-GTTCTTGC 131583 | |||||| |||| |||| | | |||| || | |||| || || || || || Sbjct 827 GCTAATGATTTTGAAACTTTAAACGAGGATGAGAA-GTTTTTCATTAAAACTGTGCTAGC 885 Query 131584 ATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAA-TTTCATTCAAG 131642 ||||| || | ||||| ||||||| | ||||| || ||| | ||| | | | | Sbjct 886 TTTCTTTGCAGCTTCAGATGGTATTGTTAATCAAAAT-TTATTAGAACGTTTTACTAATG 944 Query 131643 AAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTC 131702 ||||| | || ||||| | || || || | || ||| || ||||| | ||| Sbjct 945 AAATTCACATGTTAGAAGTGAAGTCATTTTATAGTTTACAATGTTCTATTGAAAATGTTC 1004 Query 131703 ATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATA 131762 ||| |||| || || ||||| || | |||| | || |||| ||| | ||| Sbjct 1005 ATAATGAGACATACTCTAAGTTGATAGAAACTCTTATCAAGGATGATCGTGAGAGGGATA 1064 Query 131763 AATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTA 131822 |||||| | | | | | | | |||| | ||||| || || || || |||||| ||| Sbjct 1065 TTTTATTTAACGGTATTGAACATTATCCTTCTATTAAGAAAAAGGCTGATTGGGCTCTTA 1124 Query 131823 AATGGATTCA---AGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTG 131879 |||||||||| | |||| | |||| ||| ||| | | || |||||||||| Sbjct 1125 AATGGATTCATTCAAATGAG------AGTTTTGATACTAGAATGATTGCATTTGCTTGTG 1178 Query 131880 TTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGAT 131939 |||||||||||||||||||||| |||| ||| || |||||| | || || | || Sbjct 1179 TTGAAGGTATATTCTTTTCAGGATCTTTTGCTGCAATATTTTGGTTGAAAAAAAGAGGTA 1238 Query 131940 TGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTG 131999 | | |||| || |||| || ||| || | || || || ||||||| |||||||||| Sbjct 1239 TTCTTCCTGCTCTTACATTTTCTAATGAACTTATTTCAAGGGATGAAGGTTTGCATACTG 1298 Query 132000 AATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATTAAAC 132059 | |||||| | || | || |||| | || | | || | | | |||||| Sbjct 1299 ATTTTGCT-TGTTTGCTTCACGAGTATTT-CAGAGAGA---AATCACCGT-ACATTAAAG 1352 Query 132060 AACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCA 132119 | || | | ||||||||||| || || || || ||| || | || ||||| ||| | Sbjct 1353 ATATTGTCCGTGAAGCAGTTGAAATAGAAAAAGAATTTTTTGCTGAGGCTTTACCTGTAA 1412 Query 132120 ATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTT 132179 | || ||||||||||||||| | |||| |||||||||||||| |||||||| | | Sbjct 1413 AATTAATTGGGATGAATGCTAAACAAATGAGTGAGTACATTGAATTTATTGCTGATAGAT 1472 Query 132180 TAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACA-TGGATG 132238 || || | || | || | || || ||||| ||||| | |||||| | | || | ||| Sbjct 1473 TACTTTATGAATTAGGTGAGTCTAAAATTTACAACACTCCAAACCCAT-TCCATTTTATG 1531 Query 132239 GAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 || ||||| | |||||||||| || ||||| || Sbjct 1532 GACAACATTTCATTGCAAGGTAAAACTAATTTCTTTGA 1569 >seq121 Length=1372 Score = 163 bits (180), Expect = 7e-35 Identities = 362/534 (68%), Gaps = 18/534 (3%) Strand=Plus/Plus Query 304954 TGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGAGG 305013 ||| |||||| | ||| |||| || ||||||||||||||||| | ||| |||| Sbjct 33 TGGAAGACCTCTTAAGTCAATTACTTGTCGAATTAAAGGTAAAGAGGGAAGAATTAGAGG 92 Query 305014 TAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCTCA 305073 | | | ||||| ||| | ||||||||| |||| | | |||||| || |||||| | | Sbjct 93 TTGTTTGATGGGTAAAAGAGTTGATTTTTCTGCACGTACTGTAATTACTCCTGATAGTAA 152 Query 305074 AATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCAGA 305133 ||| ||| || || | ||| |||| ||| | | ||| || |||||||||| || Sbjct 153 CATTGAACTTGATCAAATTGGATTTCCTATTAAGTTAGCTAAAATTTTAACATTTCCTGA 212 Query 305134 GAAAGTTA-ACGAGAAAAATATTAAACATTTGAGACGTTGTGTTCTTAATGGAAATAGCA 305192 ||||| | || | || || ||| || ||| | || || |||||| | Sbjct 213 AAAAGTAACACCATTTAATAATCAAAAGTTACAGAAAT-GTATTAATAATGGTCCAACTG 271 Query 305193 AGTATCCAGGTGCTCGTGCTGTTATAA-AACACAAGCAAAAGAAGACAATATCTTTGAAC 305251 | |||||||||||| | ||| || | |||| | | | | ||||| |||| Sbjct 272 AATATCCAGGTGCTAATTATGTAATCAGAACAGATGGACA-GAAGA--------TTGATT 322 Query 305252 CATATCGATTTAAAACAATTCAGTAAAATGCTTGAAATTAATGATATTGTTATCAGACAT 305311 | | || ||| | | | | | |||||||||| | ||||| |||||| Sbjct 323 TAAA---ATATAATAGGCATGATTTGCA-GCTTGAAATTGGATCTGTTGTTGAAAGACAT 378 Query 305312 TTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATG 305371 || | || |||| ||||| |||||||| ||||| ||||| || |||||||||||| Sbjct 379 TTACAAGATGATGACGTTGTTCTCTTCAATAGACAACCTTCACTTCACAAAATGTCTATG 438 Query 305372 ATGGCTCATAAAGTCAAAGT-ATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTG 305430 |||||||| | | | || || |||| | | | || ||| ||||| | ||||| Sbjct 439 ATGGCTCACAGAATTAAGGTAATTAACAGTA-AAACTTTTACTGTAAATCTTAGTGCAAC 497 Query 305431 TACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||| ||||||||||| ||||||||||| |||||||||||| | || ||||| || Sbjct 498 TACTCCTTATAATGCAGATTTTGATGGTGATGAAATGAATGTACACGTACCACA 551 >seq2190 Length=8095 Score = 107 bits (118), Expect = 5e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 |||||||||| |||||| | |||||||| | |||| |||||||| || || Sbjct 6711 TGATATTGTTGAGAGACATCTTTTAGACAATGACATTTTATTGTTTAATAGGCAGCCTTC 6652 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA-CATTTC 305411 |||||||| ||| ||| ||||| |||| ||| || | | || | | ||||| Sbjct 6651 ACTGCATAGAATTAGTATAATGGCACATAGAGTTAAGAT-TCATAACAACCAAACATTTA 6593 Query 305412 GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATA 305471 |||| |||||| ||| |||||| || ||||| || ||||||||||| ||||||||||| | Sbjct 6592 GATTTAATGTATGTGATTGTACTCCCTATAACGCTGATTTTGATGGTGATGAAATGAACA 6533 Query 305472 TGCATGTACCTCA 305484 | || | ||||| Sbjct 6532 TACACTTTCCTCA 6520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186777157044584