Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1858 170 3e-37 >seq1858 Length=2805 Score = 170 bits (188), Expect = 3e-37 Identities = 561/852 (66%), Gaps = 30/852 (4%) Strand=Plus/Minus Query 39346 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||||| || ||||||||||| |||| |||||| || || ||||| |||| || || || Sbjct 1573 TTTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTT 1514 Query 39406 AGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTC 39465 | | || || |||| |||||||| ||| |||||||| |||| |||||| Sbjct 1513 TGGAGTGTTGTAAATTTTAGACTCACCTAATTCATAAAGTAATCTATCAGCAATAAATTC 1454 Query 39466 TATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGT 39525 ||||| |||| || | |||||| || || | ||| || |||| |||||| | Sbjct 1453 AATGTACTCACTCATTTGTTTAGCATTCATCCCAATTAATTTTACAGGTAAAGCCTCAGC 1394 Query 39526 TAGAAACTCTTTTTCGATGTCTACGGCCTCT--GTTATTATCGATGTTACTACC-TCATC 39582 | ||| |||||||| || || || || || | | |||| | | ||| | || Sbjct 1393 AAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATATCTTTAATG-TACGGTGATT 1335 Query 39583 ACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTC 39642 ||| || | ||| || || || | || || || ||| ||| | || || Sbjct 1334 TCTCTCTGAA----ATACTCGTG-AAGCA---AACAAGCAAAATCAGTATGCAAACCTTC 1283 Query 39643 ATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAG 39702 ||| || ||| | ||| ||||||||||| || |||| | | ||| | ||||| | Sbjct 1282 ATCCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGAAGAATACCTCTTTTTTTCAA 1223 Query 39703 CCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAAC 39762 ||||||||| |||||||||||||| |||||||| || ||||| || |||||||||| Sbjct 1222 CCAAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACAAGCAAATGCAAT 1163 Query 39763 AAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCACTTCTGTGCCCAATCAGCTTT 39819 | ||| | ||| | ||||| ||| ||||| || | ||||||||||| || Sbjct 1162 CATTCTAGTATCAAAAC---TCTCATTTGAATGAATCCATTTAAGAGCCCAATCAGCCTT 1106 Query 39820 CTTCTTTACACAAGG-CATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTAT 39878 ||||| | | |||| | || ||| ||| | ||||| | | || | ||| | || Sbjct 1105 TTTCTTAATAGAAGGATAATG-TTCAATACCGTTAAATAAAATATCCCTCTCACGATCAT 1047 Query 39879 CTTTAACATATGTATCTATTAAC--AGACTATACATTTCTGAATGGATGTTTTCAATCG- 39935 | || | | || ||||| ||| ||| ||| | || ||| | |||||||| | Sbjct 1046 CCTTGATAAGAGTTTCTATCAACTTAGAGTAT--GTCTCATTATGAACATTTTCAATAGA 989 Query 39936 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTT 39995 ||| || || | ||||| | | |||| || || | || | ||| | || Sbjct 988 ACAT-TGTAAACTATAAAATGACTTCACTTCTAACATGTGAATTTCATTAGTAAAACGTT 930 Query 39996 CCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAA 40055 | ||||||| ||| || || ||||| ||| ||||| || || | ||| ||||| Sbjct 929 CTAATAAATTTTGATTAACAATACCATCTGAAGCTGCAAAGAAAGCTAGCACAGTTTTAA 870 Query 40056 TAAAATATTTTTCAT-CGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCT 40114 | ||| | || |||| | || | || || | | ||||| |||||| | | || Sbjct 869 TGAAAAACTTCTCATCCTCGTTTAAAGTT-TCAAAATCATTAGCATCTTTAGTAAAGTCA 811 Query 40115 ACTTCTTCAGCTGTCCAAAACGAC-GCCTCTGCCTTTTTGTACATGTTCCATATATCACG 40173 | ||||||| | |||| ||| ||| || ||||||||| ||||| ||| || || | Sbjct 810 ATTTCTTCAACAGTCC-AAATGACAGCAGATGCCTTTTTATACATCCCCCAAATCTCTGG 752 Query 40174 ATATTGTATTGG 40185 | |||| ||||| Sbjct 751 AAATTGAATTGG 740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686888673572160