Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1858 210 2e-49 seq342 165 6e-36 >seq1858 Length=2805 Score = 210 bits (232), Expect = 2e-49 Identities = 574/861 (67%), Gaps = 45/861 (5%) Strand=Plus/Plus Query 43712 CCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGC-GTCATTTTGGAC 43770 |||||||||| || || || ||| ||||| ||||| ||| || ||||||| |||| Sbjct 740 CCAATTCAATTTCCAGAGATTTGGGGGATGTATAAAAAGGCATCTGCTGTCATTT-GGAC 798 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGA--CTTAGCACATTGGATTGCATTAAAACCACAA 43828 | |||||| |||| || |||||||| || | | ||| | | ||||| | Sbjct 799 TGTTGAAGAAATTGACTTTACTAAAGATGCTAATGATTTTGAAA--CTTTAAACGAGGAT 856 Query 43829 GAAAAACATTTTAT---ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTC 43885 || || ||| || | || || | || || ||||| || || || || || Sbjct 857 GAGAAGTTTTTCATTAAAACTGTGCTA---GCTTTCTTTGCAGCTTCAGATGGTATTGTT 913 Query 43886 AATGAAAATTTGGTTAGT-CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT-- 43942 ||| ||||||| |||| || ||| | | ||| |||| | ||||| || || Sbjct 914 AATCAAAATTTA-TTAGAACGTTTTACTAATGAAATTCACATGTTAGAAGT--GAAGTCA 970 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 |||||| | || ||| | | || |||||| ||||| || | ||| | ||||| Sbjct 971 TTTTATAGTTTACAATGTTCTATTGAAAATGTTCATAATGAGACATACTCTAAGTTGATA 1030 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || ||||| |||| | |||| | || || ||||| | || ||| || || Sbjct 1031 GAAACTCTTATCAAGGATGATCGTGAGAGGGATATTTTATTTAACGGTATTGAA-CATTA 1089 Query 44063 -CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 ||| | ||||| | || || || ||||| ||||||||||| |||||||||| ||| Sbjct 1090 TCCTTCTATTAAGAAAAAGGCTGATTGGGCTCTTAAATGGATTCATTCAAATGAGAGTTT 1149 Query 44122 TG----GAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 || |||| || | || ||||| ||| ||||| || |||||||||||||| | Sbjct 1150 TGATACTAGAATGA----TTGCATTTGCTTGTGTTGAAGGTATATTCTTTTCAGGATCTT 1205 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 |||| || ||||||||||| || ||| ||||| | | |||| | || ||||| |||| Sbjct 1206 TTGCTGCAATATTTTGGTTGAAAAAAAGAGGTATTCTTCCTGCTCTTACATTTTCTAATG 1265 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATC 44297 | | || | |||||||| || ||| ||||||||||| ||| | | | ||| Sbjct 1266 AACTTATTTCAAGGGATGAAGGTTTGCATACTGATTTTGCTTGTTTGCTTCACGAGTATT 1325 Query 44298 TAGGAGACGATAAGCCTTCA-TGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAG 44356 | |||| || | ||| ||| |||| ||||||||| || ||||| | Sbjct 1326 TCAGAGA-GAAA-----TCACCGTA----CATTAAAGATATTGTCCGTGAAGCAGTTGAA 1375 Query 44357 ATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATG---AA 44413 |||||| |||||||| | | || ||||||||||| ||||| || ||||||| || Sbjct 1376 ATAGAAAAAGAATTTTTTGCTGAGGCTTTACCTGTAAAATTAATTGGGATGAATGCTAAA 1435 Query 44414 CTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGC 44473 | |||| | || ||||||| ||||| ||| | ||||||| ||| | ||| Sbjct 1436 C---AAATGAGTGAGTACATTGAATTTATTGCTGATAGATTACTTTATGAATTAGGTGAG 1492 Query 44474 GATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGC 44533 |||| || | | |||||| || |||||||||| || ||||| ||| |||| Sbjct 1493 TCTAAAATTTACAACACTCCAAACCCATTCCATTTTATGGACAACATTTCATTGCAAGGT 1552 Query 44534 AAAACAAACTTTTTTGaaaaa 44554 ||||| || || ||||| ||| Sbjct 1553 AAAACTAATTTCTTTGAGAAA 1573 >seq342 Length=14347 Score = 165 bits (182), Expect = 6e-36 Identities = 355/521 (68%), Gaps = 16/521 (3%) Strand=Plus/Minus Query 19348 GGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGT 19407 ||| || |||| ||||| ||||| || ||| || ||||||||||| ||| || |||| Sbjct 9376 GGAATTATGCTATATGGTCCACCTGGAACTGGTAAGACATTAATTGCTAGA-AAGTTAGG 9318 Query 19408 AAATTACTTA-CAAAACAAC--CTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAA 19464 | | |||| ||| ||| | || |||||||| ||||| |||||||| |||||||| Sbjct 9317 A--TCACTTCTCAATTCAAGAGCGCCTAAAATTGTTAATGGACCTGAAATTTTAAATAAG 9260 Query 19465 TATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAA 19524 || || |||||||| ||||||||| || || ||| |||||||| ||||| | || | Sbjct 9259 TACGTTGGTCAATCAGAAGAAAATATAAGAAATTTATTTGCTGAGGCTGAGAATGAGTAT 9200 Query 19525 AAACGTTTAGGGCGCAAAAGTTCT---TTGCACATTATAATACTAGATGAATTGGACGCA 19581 ||| | |||| | | | || || || || || || | |||||| | || || Sbjct 9199 AAAA-TGAAGGGTG--ATCGATCGCAATTACATATAATTATTTTTGATGAAATAGATGCT 9143 Query 19582 ATCTGTAAGCAAAGAGGTTCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTC 19641 || ||||| | ||||| || | | | |||||| || | || || ||||| | Sbjct 9142 ATTTGTAAAAAGAGAGGATCAGATTCTAGTGGAGTTGGGGATAAAGTAGTTAATCAGTTA 9083 Query 19642 CTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAAT 19701 | ||| |||| |||||| | || ||||||||||| || || || ||||| ||| Sbjct 9082 TTAAGTAAAATAGATGGTGTTGATAGTCTTAATAATATTTTGGTGATAGGAATGACAAAT 9023 Query 19702 AGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAA 19761 ||||| || ||||| || || ||||| |||| ||| | || ||||| || | ||| Sbjct 9022 AGACTTGATTTAATTGATGATGCATTATTGAGACCGGGTAGATTTGAAATTAAATTAGAA 8963 Query 19762 ATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATAC--ATCAACCA 19819 ||| || || || | | | | |||||| || | || ||||| | ||| | Sbjct 8962 ATTTCTTTGCCTAATCTAAAGGCAAGACAGGAAATATTTCAAATCCATACAAAGCAA--A 8905 Query 19820 TGCGACAAAATAACCTTTTAAATGACGATGTAGATCTAGAA 19860 ||| | |||||| | ||| |||| |||| |||||||| Sbjct 8904 TGCAAGGTAATAACTTCTTAGATGAAAATGTTAATCTAGAA 8864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444645675720