Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hepatospora_20eriocheir_20[genbank_20GCA_5F002087875.1_202017-04-12] 2,344 sequences; 4,834,792 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1858 197 1e-45 >seq1858 Length=2805 Score = 197 bits (218), Expect = 1e-45 Identities = 571/860 (66%), Gaps = 33/860 (4%) Strand=Plus/Minus Query 4278 TTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTA 4337 || || |||||||||||||| |||| || ||||| || |||||||||| || || || Sbjct 1572 TTCTCAAAGAAATTAGTTTTACCTTGCAATGAAATGTTGTCCATAAAATGGAATGGGTTT 1513 Query 4338 GTTGCGTTGTAATGTTTTT-CACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTC 4396 | | ||||||| ||| | ||| | | || ||| |||| ||||| | |||||| Sbjct 1512 GGAGTGTTGTAAATTTTAGACTCACCTAATTCATA-AAGTAATCTATCAGCAATAAATTC 1454 Query 4397 TATATACTGGCTCATGAGTTC-GCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATG 4455 || |||| ||||| ||| ||| || || ||||||||| | ||||||| || | | Sbjct 1453 AATGTACTCACTCATTTGTTTAGCA-TTCATCCCAATTAATTTTACAGGTAAAGCCTCAG 1395 Query 4456 TCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAG 4515 ||||| |||| |||||| || ||||| || |||||||| || | | Sbjct 1394 CAAAAAATTCTTTTTCTATTTCAACTGCTTCACGGACAATATCTTTAATGTAC------G 1341 Query 4516 ATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGT 4575 || ||| | | || || | | ||||| ||||||||| |||||||||||| | Sbjct 1340 GTGATTTCTCTCTGAAATACTCGTGAAGCAAACAAGCAAAATCAGTATGCAAACCTTCAT 1281 Query 4576 CTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCC 4635 | || ||| ||||| |||||||| || | | || | | |||||| ||||| | || Sbjct 1280 CCCTTGAAATAAGTTCATTAGAAAATGTAAGAGCAGGAAGAATACCTCTTTTTTTCAACC 1221 Query 4636 AAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTA 4695 ||||||| || ||||| || || ||||||||||| ||||| || ||||| || | | Sbjct 1220 AAAATATTGCAGCAAAAGATCCTGAAAAGAATATACCTTCAACACAAGCAAATGCAATCA 1161 Query 4696 ATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTT 4755 || | | | | || | || | ||||||||| | ||||| | ||| |||| Sbjct 1160 TTCTAGTATCAA---AACTCTCATTTGAATGAATCCATTTAAGAGCCCAATCAGCCTTTT 1104 Query 4756 TCTTAACGCACGGA-ATTGTGTATATAGCGTTAAATAATTTACTTTTTTCA-AATGGGTC 4813 |||||| | ||| | ||| | ||| |||||||||| || | ||| || | Sbjct 1103 TCTTAATAGAAGGATAATGT-TCAATACCGTTAAATAAAATATCCCTCTCACGATCATCC 1045 Query 4814 TTGAATATAAGTGTCTATTA--GTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 ||| ||| ||| ||||| | ||| ||| | ||| ||| | |||||| |||| | Sbjct 1044 TTG-ATAAGAGTTTCTATCAACTTAGAGTAT--GTCTCATTATGAACATTTTCAATAGAA 988 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || | ||||| | | ||||| | |||| ||| ||| ||| | |||| Sbjct 987 CATTGTAAACTATAAAATGACTTCACTTCTAACATGTGAATTTCATTAGTAAAACGTTCT 928 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA---TGAGAT 4988 | ||| |||| || || ||||| || |||||||| || || | ||| | | Sbjct 927 AATAAATTTTGATTAACAATACCATCTGAAGCTGCAAAGAAAGCTAGCACAGTTTTAATG 868 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTT--TTTCCAGTGGGGCAAATCTTTAGTTAAAT 5046 | ||| | || || || | | |||||| || | | ||||||||| || | Sbjct 867 AAAAACTTCTCATCCTC-GTTTAAAGTTTCAAAATCATTAG----CATCTTTAGTAAAGT 813 Query 5047 CAACTTCTTCAACAGTCCAAAACGAC-GCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 ||| |||||||||||||| ||| ||| || || ||||| ||||| |||||| || Sbjct 812 CAATTTCTTCAACAGTCC-AAATGACAGCAGATGCCTTTTTATACATCCCCCAAATCTCT 754 Query 5106 GGATACTGAATCGGAAGTAT 5125 ||| | ||||| || ||||| Sbjct 753 GGAAATTGAATTGGCAGTAT 734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427037400260552